View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16197_low_1 (Length: 737)

Name: NF16197_low_1
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16197_low_1
NF16197_low_1
[»] chr3 (4 HSPs)
chr3 (124-653)||(19768427-19768956)
chr3 (56-276)||(29199150-29199369)
chr3 (518-650)||(29199942-29200074)
chr3 (407-485)||(29200134-29200212)
[»] chr4 (7 HSPs)
chr4 (372-653)||(37616579-37616860)
chr4 (56-183)||(25901099-25901225)
chr4 (419-490)||(1659810-1659881)
chr4 (419-490)||(32226087-32226158)
chr4 (517-574)||(25899421-25899478)
chr4 (241-300)||(5478209-5478268)
chr4 (160-202)||(50227374-50227416)
[»] chr8 (3 HSPs)
chr8 (241-300)||(2685044-2685103)
chr8 (12-60)||(6174364-6174412)
chr8 (590-648)||(770534-770592)
[»] chr2 (1 HSPs)
chr2 (241-300)||(45008469-45008528)
[»] chr1 (1 HSPs)
chr1 (590-653)||(51389463-51389526)
[»] chr7 (1 HSPs)
chr7 (517-570)||(32663200-32663253)


Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 124 - 653
Target Start/End: Complemental strand, 19768956 - 19768427
Alignment:
Q  124 tgttatagtttcttctatagcaaaagagatgacaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct 223  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768956 tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct 19768857  T
Q  224 caaacaaaa-tcagcttctcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattcattgacggataggttccacaac 322  Q
     ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  19768856 aaaaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaaggttcctctccc-tgcctcaaattcattgacggataggttccacaac 19768758  T
Q  323 gataatggctaaacaacatgcaccattttcttccaataacctgccaagaataaaaaatgcagatagttttagaggcatgagtacatgagttaattgatat 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19768757 gataatggctaaacaacatgcaccattttcttccaataacctgccaagaataaaaaatgcagatagttttagaggcatcagtacatgagttaattgatat 19768658  T
Q  423 aacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagatatcatggtccttaagataaacagagttaatttccattc 522  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19768657 aacttaattttaacatgttagaaactaaaatctgcataatataattgaacataccaatagatatcatggtccttaagataaacagagttaattgccattc 19768558  T
Q  523 tcatttcaggtttaaccttccataatcacacaatctagggaaaatagtatgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaatccata 622  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  19768557 tcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaatccata 19768458  T
Q  623 aaaatgtcaaacaaagaagtgttagagagag 653  Q
    |||||||||||||||||||||||||||||||    
T  19768457 aaaatgtcaaacaaagaagtgttagagagag 19768427  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 56 - 276
Target Start/End: Complemental strand, 29199369 - 29199150
Alignment:
Q  56 gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga 155  Q
    ||||||||||||||||||||||||||| |||||       ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  29199369 gtgaacaatttcaatatagataaatctaaagagaaaaaa-tatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatga 29199271  T
Q  156 caaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagctcaaacaaaatcagcttctcaaatttctccttc 255  Q
     ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29199270 gaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttc 29199171  T
Q  256 tcagtttgcacatgatttaag 276  Q
    ||| |||||||||||||||||    
T  29199170 tcattttgcacatgatttaag 29199150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 518 - 650
Target Start/End: Complemental strand, 29200074 - 29199942
Alignment:
Q  518 cattctcatttcaggtttaaccttccataatcacacaatctagggaaaatagtatgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaat 617  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||    
T  29200074 cattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaat 29199975  T
Q  618 ccataaaaatgtcaaacaaagaagtgttagaga 650  Q
    |||||||||||||||||||||||||||||||||    
T  29199974 ccataaaaatgtcaaacaaagaagtgttagaga 29199942  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 407 - 485
Target Start/End: Complemental strand, 29200212 - 29200134
Alignment:
Q  407 atgagttaattgatataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagata 485  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29200212 atgagttaattgatataacttatttttaacatgttagaaactgaaatctgcataatataattgaacataccaatagata 29200134  T

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Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 372 - 653
Target Start/End: Original strand, 37616579 - 37616860
Alignment:
Q  372 ataaaaaatgcagatagttttagaggcatgagtacatgagttaattgatataacttaattttaacatgttagaaactgaaatctgcataatataattgaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37616579 ataaaaaatgcagatagttttagaggcatgagtacatgagttaattgatataacttaattttaacatgttagaaacttaaatctgcataatataattgaa 37616678  T
Q  472 cataccaatagatatcatggtccttaagataaacagagttaatttccattctcatttcaggtttaaccttccataatcacacaatctagggaaaatagta 571  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37616679 cataccaatagatatcatggtccttaagataaacagagttaattgccattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagta 37616778  T
Q  572 tgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagag 653  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616779 tgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagag 37616860  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 25901099 - 25901225
Alignment:
Q  56 gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga 155  Q
    ||||||||||||||| |||||||||||||||||       |||||||||||||||||||||| ||| || || ||||||||||||| |||||| ||||||    
T  25901099 gtgaacaatttcaatgtagataaatctcaagagaaaaag-tatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatga 25901197  T
Q  156 caaagaaacaaataaaagtggaagaaga 183  Q
     |||||||||||||||||||||||||||    
T  25901198 gaaagaaacaaataaaagtggaagaaga 25901225  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 1659810 - 1659881
Alignment:
Q  419 atataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagatatcatg 490  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  1659810 atataacttgattttaacatgttagaaactgaaatctacataatataattgaacataccaatagagatcatg 1659881  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 32226087 - 32226158
Alignment:
Q  419 atataacttaattttaacatgttagaaactgaaatctgcataatataattgaacataccaatagatatcatg 490  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  32226087 atataacttgattttaacatgttagaaactgaaatctacataatataattgaacataccaatagagatcatg 32226158  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 517 - 574
Target Start/End: Original strand, 25899421 - 25899478
Alignment:
Q  517 ccattctcatttcaggtttaaccttccataatcacacaatctagggaaaatagtatgc 574  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  25899421 ccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc 25899478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 5478268 - 5478209
Alignment:
Q  241 tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc 300  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||    
T  5478268 tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc 5478209  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
Q  160 gaaacaaataaaagtggaagaagaaaatttacccataagaacc 202  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  50227374 gaaacaaataaaagtgaaagaagaaactttacccataagaacc 50227416  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 2685044 - 2685103
Alignment:
Q  241 tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc 300  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||    
T  2685044 tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc 2685103  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 6174364 - 6174412
Alignment:
Q  12 catcatcacaggaaaacttttgtctctgttgaaaggcgagaaaagtgaa 60  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6174364 catcatcactggaaaacttttgtctctgttgaaaggtgagaaaagtgaa 6174412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 648
Target Start/End: Complemental strand, 770592 - 770534
Alignment:
Q  590 aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga 648  Q
    ||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| |||||    
T  770592 aggggcttaaattctcgcaaatgcaaatccataaaaaggccaaacaaagaagttttaga 770534  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 45008469 - 45008528
Alignment:
Q  241 tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc 300  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||    
T  45008469 tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc 45008528  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 590 - 653
Target Start/End: Original strand, 51389463 - 51389526
Alignment:
Q  590 aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagag 653  Q
    ||||| ||||||||| |||||||||||||||||||||  |||||||||||||| ||||| ||||    
T  51389463 aggggcttaaattctcgcaaatgcaaatccataaaaagatcaaacaaagaagttttagaaagag 51389526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 32663253 - 32663200
Alignment:
Q  517 ccattctcatttcaggtttaaccttccataatcacacaatctagggaaaatagt 570  Q
    ||||||||| |||||| |||||||||| | ||||||||||| ||||||||||||    
T  32663253 ccattctcaattcaggcttaaccttcctttatcacacaatccagggaaaatagt 32663200  T

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