View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16197_low_2 (Length: 444)
Name: NF16197_low_2
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16197_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 152 - 425
Target Start/End: Complemental strand, 37046850 - 37046557
Alignment:
| Q |
152 |
aagtttttgtatctcacaagactatgtcattttgcataatatgtagataactttcaaactgattgaaaccattatgacgtacatata------------- |
238 |
Q |
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| T |
37046850 |
aagtttttgtatctcacaagactatgtcattttgcataatatgtagataactttcaaactgattgaaaccattatgacgtatatatagaattcacaaaca |
37046751 |
T |
|
| Q |
239 |
--tagtttcatttcaacagtatgaattttgcctatatacctcaacatttttagaagctcct-----tgatctgagtttaaataaaagaaacaaataattg |
331 |
Q |
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| T |
37046750 |
tatagtttcatttcaacagtatgaattttgcctatatacctcaacatttttagaagctcctctccttgatctgagtttaaataaaagaaaaaaataattg |
37046651 |
T |
|
| Q |
332 |
tatcatttgagaagctcttgaaagctgaaactaatttaaatggacctaacctaaggttgaaaaatttcatcaaattcattagcaaattaaacat |
425 |
Q |
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| T |
37046650 |
tatcatttgagaagctcttgaaagctgaaactaatttaaatggaccttacctaaggttgaaaaatttcatcaaattcattagcaaattaaacat |
37046557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 37047279 - 37047125
Alignment:
| Q |
1 |
ccgatgacaacactagcacacataataagataactttttgaataaatggagacattgcaacttaggttaatcttttgcttagaagcaggggctgacctgg |
100 |
Q |
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| T |
37047279 |
ccgatgacaacactagcacacataataagataactttttgaataaatggagacattgcaacttaggttaatcttttgcttagaagcaggggcggaccagg |
37047180 |
T |
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| Q |
101 |
accttcaatattgattgactgctttctgcctacgagttttataggaaatacaagt |
155 |
Q |
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| T |
37047179 |
atcttcaatatcgattgactgctttctgcctatgagttttataggaaatacaagt |
37047125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 6590695 - 6590579
Alignment:
| Q |
313 |
taaaagaaacaaataattgtatcatttgagaagctcttgaaagctg-aaactaatttaa---atggacctaacctaaggttgaaaaatttcatcaaattc |
408 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||| || |||||| ||||| ||||| |||||||||||||| | |||||||||||||| |
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| T |
6590695 |
taaaagaaacaaataattgtctcatttgaaaagctcttgaaagatggaaactattttaacctatggaactaacctaaggttgttacatttcatcaaattc |
6590596 |
T |
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| Q |
409 |
attagcaaattaaacat |
425 |
Q |
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| T |
6590595 |
attagcaaattaaacat |
6590579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 6584602 - 6584499
Alignment:
| Q |
313 |
taaaagaaacaaataattgtatcatttgagaagctcttgaaagct-gaaactaatttaaatggacctaacctaaggttgaaaaatttcatcaaattcatt |
411 |
Q |
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|||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||| | | |||||||| |||||||| |
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| T |
6584602 |
taaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaaactaatt----------taacctaaggttaatacatttcatcgaattcatt |
6584513 |
T |
|
| Q |
412 |
agcaaattaaacat |
425 |
Q |
| |
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| T |
6584512 |
agcaaattaaacat |
6584499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 6584703 - 6584652
Alignment:
| Q |
258 |
tgaattttgcctatatacctcaacatttttagaagctccttgatctgagttt |
309 |
Q |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
6584703 |
tgaattttgcctatatgcctcgacatttttagaagctccctgatctgagttt |
6584652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 6590854 - 6590783
Alignment:
| Q |
155 |
tttttgtatctcacaagactatgtcattttgcataatatgtagataactttcaaactgattgaaaccattatgac |
229 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
6590854 |
tttttgtatctcacaagacac---cattttacataatatgtagataactttcaaaccgattcaaaccaatatgac |
6590783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 296
Target Start/End: Original strand, 8537610 - 8537640
Alignment:
| Q |
266 |
gcctatatacctcaacatttttagaagctcc |
296 |
Q |
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| T |
8537610 |
gcctatatacctcaacatttttagaagctcc |
8537640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 21836112 - 21836082
Alignment:
| Q |
272 |
atacctcaacatttttagaagctccttgatc |
302 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21836112 |
atacctcaacatttttagaagctccttgatc |
21836082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 21836038 - 21836002
Alignment:
| Q |
313 |
taaaagaaacaaataattgtatcatttgagaagctct |
349 |
Q |
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||||||||||| |||||||| |||||||||||||||| |
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| T |
21836038 |
taaaagaaacagataattgtctcatttgagaagctct |
21836002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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