View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16197_low_3 (Length: 327)
Name: NF16197_low_3
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16197_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 18524558 - 18524865
Alignment:
| Q |
1 |
ctaatataagaatcttatatatccaaataatggtcacagtttaatttcaccaaagatctaaatgatagtgattgataaggttcactaaaataataaattg |
100 |
Q |
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| T |
18524558 |
ctaatatacgaatcttatatatccaaataatggtcacagtttaatttcaccaaagatctaaatgatagtgattgataaggttcactaaaataataaattg |
18524657 |
T |
|
| Q |
101 |
ctacctggcataacatacaagaatatattcaaatcatgtatattcttaatgtccataataaggttatcattatagtgtggcagtgttcataagtacagct |
200 |
Q |
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| T |
18524658 |
ctacctggcataacatacaagaatatattcaaatcatgtatattcttaatgtccataataaggttatcattatagtgtggcagtgttcataagtacagct |
18524757 |
T |
|
| Q |
201 |
tcttaatgaacgttaaagatttcaccaaatttagtacacacaaagggtcaagtctcaaccgcatgctttgttttaaggtacaatgagaagaatcaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18524758 |
tcttaatgaacgttaaagatttcaccaaatttagtacacacaaagggtcaagtctcaaccgcatgctttgttttaaggtacaatgagaagaatcaaacaa |
18524857 |
T |
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| Q |
301 |
gttaatgg |
308 |
Q |
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| |||||| |
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| T |
18524858 |
ggtaatgg |
18524865 |
T |
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