View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16197_low_4 (Length: 250)
Name: NF16197_low_4
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16197_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 36061278 - 36061186
Alignment:
| Q |
2 |
atatatctaacggataagaagttagagtcttaattcaatctcaaacaaataagnnnnnnnttaatctgataactaatcattaacttttgcaat |
94 |
Q |
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| T |
36061278 |
atatatctaacggataagaaattagagtcttaattcaatctcaaacaaataagaaaaaaattaatctgataactaatcattaacttttgcaat |
36061186 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 36061117 - 36061035
Alignment:
| Q |
163 |
cattattgttaggaatgcatt-tcaaaattttgacgcccttaccttacggcatcggtgacgcacgtcccattattcttctcac |
244 |
Q |
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| T |
36061117 |
cattattgttaggtatgcattctcaaaattttgacgcccttatcttacggcatcggtgacgcacgtcccattattcttttcac |
36061035 |
T |
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