View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16197_low_6 (Length: 237)

Name: NF16197_low_6
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16197_low_6
NF16197_low_6
[»] chr4 (9 HSPs)
chr4 (14-147)||(30567104-30567237)
chr4 (130-210)||(30567311-30567391)
chr4 (94-147)||(30567260-30567313)
chr4 (74-192)||(25057281-25057399)
chr4 (128-192)||(54846161-54846225)
chr4 (128-207)||(46218696-46218775)
chr4 (129-194)||(50609439-50609504)
chr4 (83-176)||(53481193-53481286)
chr4 (128-192)||(12832937-12833001)
[»] chr2 (6 HSPs)
chr2 (74-192)||(44602690-44602808)
chr2 (76-192)||(32487891-32488007)
chr2 (80-194)||(5663404-5663519)
chr2 (127-174)||(18697437-18697484)
chr2 (130-192)||(24220649-24220711)
chr2 (131-192)||(15139932-15139993)
[»] chr3 (1 HSPs)
chr3 (76-161)||(28946687-28946772)
[»] chr1 (1 HSPs)
chr1 (77-170)||(1947039-1947132)
[»] chr6 (2 HSPs)
chr6 (127-190)||(32159586-32159650)
chr6 (89-192)||(14392801-14392903)
[»] chr8 (2 HSPs)
chr8 (75-159)||(38246478-38246562)
chr8 (130-192)||(20129285-20129347)
[»] chr7 (3 HSPs)
chr7 (89-192)||(21376215-21376318)
chr7 (130-192)||(13063682-13063744)
chr7 (130-192)||(44362724-44362786)
[»] chr5 (1 HSPs)
chr5 (130-192)||(35076888-35076950)
[»] scaffold0036 (1 HSPs)
scaffold0036 (127-192)||(3446-3511)
[»] scaffold0031 (1 HSPs)
scaffold0031 (127-160)||(51779-51812)
[»] scaffold1185 (1 HSPs)
scaffold1185 (89-153)||(1568-1632)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 30567104 - 30567237
Alignment:
Q  14 gacatcatccacctaagttctatccacctgcccacctgaatgagtgataacctgaatgtatcccgcactgagtagccatgaattggatctaacaaccacc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  30567104 gacatcatccacctaagttctatccacctgcccacctgaatgagtgataacctgtatgtatcccgcactgagtagccatgaattggatctaacaaccact 30567203  T
Q  114 tccatctattagcaacattttcctgcaacacaat 147  Q
    ||| ||||||||||||||||||||||||||||||    
T  30567204 tccgtctattagcaacattttcctgcaacacaat 30567237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 30567311 - 30567391
Alignment:
Q  130 attttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctcccaggttagtaaacgacgttt 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  30567311 attttcctgcaacacaatgttatgtaataaaagagaacactccctaacactgtcttcctcccaggctagtaaacgacgttt 30567391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 30567313 - 30567260
Alignment:
Q  94 aattggatctaacaaccacctccatctattagcaacattttcctgcaacacaat 147  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30567313 aattggatctaacaaccacctccatctattaccaacattttcctgcaacacaat 30567260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 25057281 - 25057399
Alignment:
Q  74 tcccgcactgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacactccc 173  Q
    |||| |||||| ||||||||||| ||||||||||||||  ||||  | | |  ||||||||||||||| | |||||||||||||||||| ||||||||||    
T  25057281 tcccacactgaatagccatgaataggatctaacaaccatttccaagtgtcattaacattttcctgcaaaataatgttatgtaataaaagagaacactccc 25057380  T
Q  174 taacactgtcttcctccca 192  Q
     | |||| || ||||||||    
T  25057381 gagcactttcctcctccca 25057399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 54846161 - 54846225
Alignment:
Q  128 acattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||||| ||||| || ||||||||    
T  54846161 acattttcctgcaaaacaatgttatgtagtaaaacagaacactccctcacactctcctcctccca 54846225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 46218775 - 46218696
Alignment:
Q  128 acattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctcccaggttagtaaacgacg 207  Q
    |||||||||||||| ||||||||||||||||| |  ||||||||||| ||| | || |||||||| |  |||||||||||    
T  46218775 acattttcctgcaaaacaatgttatgtaataacacagaacactccctcacattctcctcctcccaagccagtaaacgacg 46218696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 50609439 - 50609504
Alignment:
Q  129 cattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctcccagg 194  Q
    |||| |||||||| ||||||||||| |||||||  ||||||||||| ||||| || ||||||||||    
T  50609439 cattatcctgcaaaacaatgttatgaaataaaactgaacactccctcacactttcctcctcccagg 50609504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 53481193 - 53481286
Alignment:
Q  83 gagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacactccctaa 176  Q
    ||||| |||||||| |||||||||| ||||| |||| | | |  |||| |||||||||| | |||||||| |||||| || |||||||||||||    
T  53481193 gagtaaccatgaatgggatctaacagccaccgccatttgtcatgaacagtttcctgcaaaaaaatgttatataataacagagaacactccctaa 53481286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 12833001 - 12832937
Alignment:
Q  128 acattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||||| |||||||||| |||||||   | ||||||||| ||||| || ||||||||    
T  12833001 acattttcctgcaaaacaatgttatctaataaagttgcacactccctcacactctcctcctccca 12832937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 44602808 - 44602690
Alignment:
Q  74 tcccgcactgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacactccc 173  Q
    ||||||||||| |||||||||||||||||||| |||||||||||  |||| | |||   ||||||||| |||||||||| ||||||||  ||||||||||    
T  44602808 tcccgcactgaatagccatgaattggatctaataaccacctccaagtatttgtaacggattcctgcaaaacaatgttatataataaaatagaacactccc 44602709  T
Q  174 taacactgtcttcctccca 192  Q
    ||||||| |||||||||||    
T  44602708 taacactctcttcctccca 44602690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 32487891 - 32488007
Alignment:
Q  76 ccgcactgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacactcccta 175  Q
    |||||||||  | |||||||| ||||||||||||||||||||  ||| |  ||   |||||||||| |||| ||||||||||||||  || ||||||||     
T  32487891 ccgcactgaacaaccatgaataggatctaacaaccacctccaagtatcatgaatcgtttcctgcaaaacaacgttatgtaataaaacagagcactccctc 32487990  T
Q  176 acactgtcttcctccca 192  Q
    ||||| || ||||||||    
T  32487991 acactctcctcctccca 32488007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 5663404 - 5663519
Alignment:
Q  80 actgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgtt-atgtaataaaagcgaacactccctaaca 178  Q
    ||||| ||||||||| | ||||||||  ||||||||||  ||| |  |||||| |||||||| |||||||| |||||||||||  ||||||||||| |||    
T  5663404 actgaatagccatgagtaggatctaaataccacctccaagtatcatgaacattatcctgcaaaacaatgtttatgtaataaaattgaacactccctcaca 5663503  T
Q  179 ctgtcttcctcccagg 194  Q
     | || ||||||||||    
T  5663504 ttttcctcctcccagg 5663519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 18697437 - 18697484
Alignment:
Q  127 aacattttcctgcaacacaatgttatgtaataaaagcgaacactccct 174  Q
    |||||| |||||||| |||||||||||||||||||  |||||||||||    
T  18697437 aacattatcctgcaaaacaatgttatgtaataaaacagaacactccct 18697484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 24220711 - 24220649
Alignment:
Q  130 attttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||| ||||||||||||||||| |  ||||||| ||| ||||| || ||||||||    
T  24220711 attttcctgcaaaacaatgttatgtaataacacagaacactacctcacactctcctcctccca 24220649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 15139993 - 15139932
Alignment:
Q  131 ttttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    ||||||||||| |||||||||||||||||||  | |||||| || ||||| || ||||||||    
T  15139993 ttttcctgcaaaacaatgttatgtaataaaaaagcacactctctcacactatcctcctccca 15139932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 28946687 - 28946772
Alignment:
Q  76 ccgcactgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaa 161  Q
    ||||||||| || |||||||| ||||||| |||||||||||||  || || ||||  |||||| || |||||||||||||||||||    
T  28946687 ccgcactgaataaccatgaataggatctagcaaccacctccatgaatcagtaacaaattcctgtaaaacaatgttatgtaataaaa 28946772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 1947132 - 1947039
Alignment:
Q  77 cgcactgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacact 170  Q
    |||||||| |||||||||| ||||||||||||||| |||||  ||| |  |||    |||||||| |||||||||||||||||||| |||||||    
T  1947132 cgcactgaatagccatgaactggatctaacaaccatctccaagtatcattaacggaatcctgcaaaacaatgttatgtaataaaagagaacact 1947039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 32159650 - 32159586
Alignment:
Q  127 aacattttcctgcaacacaatgttatgtaataaaagc-gaacactccctaacactgtcttcctcc 190  Q
    ||||||||||||||||||||||||||||||||||| | || |||||||| ||||| || ||||||    
T  32159650 aacattttcctgcaacacaatgttatgtaataaaaacagagcactccctcacactctcctcctcc 32159586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 14392801 - 14392903
Alignment:
Q  89 ccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcct 188  Q
    |||||||| ||||||||||||||||||||  ||| |  ||| ||||||||||| |||| |||||| | ||| |  ||||||||||| ||||| || ||||    
T  14392801 ccatgaataggatctaacaaccacctccaagtatcatgaac-ttttcctgcaaaacaacgttatgaagtaacacagaacactccctcacactctcctcct 14392899  T
Q  189 ccca 192  Q
    ||||    
T  14392900 ccca 14392903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 38246478 - 38246562
Alignment:
Q  75 cccgcactgagtagccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataa 159  Q
    ||||||| || ||||||||||| |||||||||| ||||| |||  ||||   |||||| || ||||| |||||||||||||||||    
T  38246478 cccgcaccgaatagccatgaataggatctaacagccaccgccaggtattgtaaacattatcgtgcaaaacaatgttatgtaataa 38246562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 20129347 - 20129285
Alignment:
Q  130 attttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||| ||||||||||||||||| |  ||||||||| | ||||| || ||||||||    
T  20129347 attttcctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctccca 20129285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 21376215 - 21376318
Alignment:
Q  89 ccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcct 188  Q
    ||||||||||||||||||| |||||||||  |||   | |||||||||||||| ||| ||||||| | ||| |  ||||||||||| ||| | || ||||    
T  21376215 ccatgaattggatctaacagccacctccaagtatcttcgacattttcctgcaaaacattgttatgaagtaacacagaacactccctcacattctcctcct 21376314  T
Q  189 ccca 192  Q
    ||||    
T  21376315 ccca 21376318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 13063744 - 13063682
Alignment:
Q  130 attttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||| ||||||||||||||||| |  ||||||||| | ||||| || ||||||||    
T  13063744 attttcctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctccca 13063682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 44362724 - 44362786
Alignment:
Q  130 attttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||| ||||||||||||||||| |  ||||||||| | ||||| || ||||||||    
T  44362724 attttcctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctccca 44362786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 35076950 - 35076888
Alignment:
Q  130 attttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    |||||||||||| ||||||||| ||||||| |  ||||||||||| ||||| || ||||||||    
T  35076950 attttcctgcaaaacaatgttacgtaataacatagaacactccctcacactctcctcctccca 35076888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 3511 - 3446
Alignment:
Q  127 aacattttcctgcaacacaatgttatgtaataaaagcgaacactccctaacactgtcttcctccca 192  Q
    ||||||||||||||| |||||||||  |||||||   ||||||||||| ||||| || ||||||||    
T  3511 aacattttcctgcaaaacaatgttagataataaagcagaacactccctcacactatcctcctccca 3446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 51779 - 51812
Alignment:
Q  127 aacattttcctgcaacacaatgttatgtaataaa 160  Q
    ||||||||||||||| ||||||||||||||||||    
T  51779 aacattttcctgcaaaacaatgttatgtaataaa 51812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1185 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 1632 - 1568
Alignment:
Q  89 ccatgaattggatctaacaaccacctccatctattagcaacattttcctgcaacacaatgttatg 153  Q
    |||| ||| ||||||||||||||||||||  ||| |  ||||||||||||||| |||| ||||||    
T  1632 ccataaataggatctaacaaccacctccaattatcatgaacattttcctgcaaaacaacgttatg 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University