View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16197_low_9 (Length: 221)
Name: NF16197_low_9
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16197_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 15976513 - 15976322
Alignment:
| Q |
11 |
gagtagcatagggatgtaatttttggatgacaccaacatttttatcatagactgttttgtgactctttgagtagaattagtagtgtaatttcaatgatga |
110 |
Q |
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| T |
15976513 |
gagtggcatatggatgtaatttttggatgaca---acatttttatcatagactgttttgtgactctttgagcagaattagtagtgtaatttcaatgatga |
15976417 |
T |
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| Q |
111 |
tgagtgattttagaggtataaaatatcattttattttctcagttgttactccgttgtgattga-ttgatttattataaaatcttgaataccttgt |
204 |
Q |
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| T |
15976416 |
tgagtggttttagaggtatgaaatatcattttattgtctcagttgttactccgttgtgattgattttattttttataaaatcttgaataccttgt |
15976322 |
T |
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