View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16198_high_1_N (Length: 407)

Name: NF16198_high_1_N
Description: NF16198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16198_high_1_N
NF16198_high_1_N
[»] chr4 (14 HSPs)
chr4 (34-279)||(36426746-36426991)
chr4 (282-407)||(36427200-36427325)
chr4 (50-246)||(36405253-36405446)
chr4 (1-35)||(22829649-22829683)
chr4 (1-33)||(42755242-42755274)
chr4 (1-33)||(52180955-52180987)
chr4 (1-32)||(3387393-3387424)
chr4 (1-32)||(14576694-14576725)
chr4 (1-32)||(32655699-32655730)
chr4 (1-32)||(42053445-42053476)
chr4 (1-34)||(21075730-21075763)
chr4 (1-34)||(46258152-46258185)
chr4 (1-33)||(34459808-34459840)
chr4 (1-29)||(54979319-54979347)
[»] chr1 (17 HSPs)
chr1 (1-35)||(25815511-25815545)
chr1 (1-34)||(48662548-48662581)
chr1 (1-33)||(2978310-2978342)
chr1 (1-33)||(32133390-32133422)
chr1 (1-32)||(4052580-4052611)
chr1 (1-32)||(13312625-13312656)
chr1 (1-32)||(28220860-28220891)
chr1 (1-32)||(35978693-35978724)
chr1 (1-32)||(48964558-48964589)
chr1 (1-34)||(19506273-19506306)
chr1 (1-33)||(4893477-4893509)
chr1 (1-33)||(29054790-29054822)
chr1 (1-33)||(29184978-29185010)
chr1 (1-33)||(30489557-30489589)
chr1 (1-33)||(33363080-33363112)
chr1 (1-33)||(40094694-40094726)
chr1 (1-33)||(42069302-42069334)
[»] chr3 (9 HSPs)
chr3 (1-34)||(49359848-49359881)
chr3 (2-35)||(49374678-49374711)
chr3 (1-33)||(24987595-24987627)
chr3 (1-33)||(25467373-25467405)
chr3 (1-33)||(44792831-44792863)
chr3 (1-32)||(5908119-5908150)
chr3 (1-32)||(48079962-48079993)
chr3 (1-32)||(50481252-50481283)
chr3 (1-33)||(19454672-19454704)
[»] chr7 (10 HSPs)
chr7 (1-33)||(46181111-46181143)
chr7 (1-32)||(5023374-5023405)
chr7 (1-32)||(16567466-16567497)
chr7 (1-32)||(16598165-16598196)
chr7 (1-32)||(19804937-19804968)
chr7 (1-36)||(48645995-48646030)
chr7 (1-35)||(28067455-28067489)
chr7 (1-35)||(46782984-46783018)
chr7 (1-33)||(17172403-17172435)
chr7 (1-33)||(44300611-44300643)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-32)||(240650-240681)
[»] chr6 (6 HSPs)
chr6 (1-32)||(6337133-6337164)
chr6 (1-32)||(13534372-13534403)
chr6 (1-33)||(1221893-1221925)
chr6 (4-32)||(6799608-6799636)
chr6 (1-33)||(24447304-24447336)
chr6 (1-33)||(31070695-31070727)
[»] chr5 (11 HSPs)
chr5 (1-32)||(14645209-14645240)
chr5 (1-32)||(15719365-15719396)
chr5 (1-31)||(31149879-31149909)
chr5 (1-33)||(7977923-7977955)
chr5 (1-29)||(14087560-14087588)
chr5 (1-33)||(14088161-14088193)
chr5 (1-33)||(33347259-33347291)
chr5 (1-33)||(34718967-34718999)
chr5 (1-33)||(35851983-35852015)
chr5 (1-33)||(36470633-36470665)
chr5 (1-33)||(41692651-41692683)
[»] chr2 (8 HSPs)
chr2 (1-32)||(668155-668186)
chr2 (1-32)||(23231626-23231657)
chr2 (1-32)||(25424643-25424674)
chr2 (1-32)||(33867730-33867761)
chr2 (1-31)||(31440820-31440850)
chr2 (4-33)||(4480950-4480979)
chr2 (1-33)||(4289528-4289560)
chr2 (1-33)||(44070590-44070622)
[»] chr8 (7 HSPs)
chr8 (1-33)||(1667160-1667192)
chr8 (1-33)||(2472465-2472497)
chr8 (1-33)||(19643698-19643730)
chr8 (1-33)||(20216099-20216131)
chr8 (1-33)||(20235697-20235729)
chr8 (1-33)||(24891603-24891635)
chr8 (1-33)||(37226957-37226989)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 279
Target Start/End: Original strand, 36426746 - 36426991
Alignment:
Q  34 atcataactcttaagtattgttgtgcatttccaaaatggaccaactatgtttttgtctttctataattgtactgctacaaccttgagaatcaccccaaga 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36426746 atcataactcttaagtattgttgtgcatttccaaaatggaccaactatgtttttgtctttctataattgtactgctacaaccttgagaatcaccccaaga 36426845  T
Q  134 ctagttcaccactgcatcagagaagcaacccaaatgttcccctatttcacagtcacttcaacaaaatcaccaaagcctaaataccaataaaaatcctcag 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36426846 ctagttcaccactgcatcagagaagcaacccaaatgttcccctatttcacagtcacttcaacaaaataaccaaagcctaaataccaataaaaatcctcag 36426945  T
Q  234 ctagaaccaaaagtcatctaccgttggaaccaaaacagctccatgc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36426946 ctagaaccaaaagtcatctaccgttggaaccaaaacagctccatgc 36426991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 36427200 - 36427325
Alignment:
Q  282 accattttcggaatccatgcagaccagcacaaatccaatcttctccattcaagctgagacatgatttgggttcaaacaccattgagaaaattggcaatta 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36427200 accattttcggaatccatgcagaccagcacaaatccaatcttctccattcaagctgagacatgatttgggttcaaacaccattgagaaaattggtaatta 36427299  T
Q  382 aaccctttagttttcatttatcaacc 407  Q
    ||||||||||||||||||||||||||    
T  36427300 aaccctttagttttcatttatcaacc 36427325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 36405253 - 36405446
Alignment:
Q  50 attgttgtgcatttccaaaatggaccaactatgtttttgtctttctataattgtactgctacaaccttgagaatcaccccaagactagttcaccactgca 149  Q
    |||||| | |||||| |||||  || ||| |||||||||| || |||| ||||||||||||||||||||||| ||||| ||| |  | |||||||||||     
T  36405253 attgttttccatttctaaaattaacaaacaatgtttttgtgttgctatgattgtactgctacaaccttgagagtcaccacaacaacaattcaccactgcc 36405352  T
Q  150 tcagagaagcaacccaaatgttcccctatttcacagtcacttcaacaaaatcaccaaagcctaaataccaataaaaatcctcagctagaaccaaaag 246  Q
     ||||| ||||||||  ||||||| | ||| || | ||||||||||   ||||  |||||||||||| || ||||||||  ||| |||| |||||||    
T  36405353 gcagagcagcaacccgcatgttcctccattacaaactcacttcaac---atcagaaaagcctaaatatcattaaaaatcagcagttagagccaaaag 36405446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22829683 - 22829649
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22829683 ccctacccattgggtacccattgccatccctaaat 22829649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42755274 - 42755242
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  42755274 ccctacccattgggtacccattgccatccctaa 42755242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52180955 - 52180987
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  52180955 ccctacccattgggtacccattgccatccctaa 52180987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3387393 - 3387424
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  3387393 ccctacccattgggtacccattgccatcccta 3387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14576725 - 14576694
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  14576725 ccctacccattgggtacccattgccatcccta 14576694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32655699 - 32655730
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  32655699 ccctacccattgggtacccattgccatcccta 32655730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 42053445 - 42053476
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  42053445 ccctacccattgggtacccattgccatcccta 42053476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21075763 - 21075730
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaa 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  21075763 ccctatccattgggtacccattgccatccctaaa 21075730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46258152 - 46258185
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  46258152 ccctacccattggatacccattgccatccctaaa 46258185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34459808 - 34459840
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||| |||||||||||||||||||||||||    
T  34459808 ccctacctattgggtacccattgccatccctaa 34459840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54979319 - 54979347
Alignment:
Q  1 ccctacccattgggtacccattgccatcc 29  Q
    |||||||||||||||||||||||||||||    
T  54979319 ccctacccattgggtacccattgccatcc 54979347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25815511 - 25815545
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25815511 ccctacccattgggtacccattgccatccctaaat 25815545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 48662581 - 48662548
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  48662581 ccctacccattgggtacccattgccatccctaaa 48662548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2978342 - 2978310
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  2978342 ccctacccattgggtacccattgccatccctaa 2978310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32133422 - 32133390
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  32133422 ccctacccattgggtacccattgccatccctaa 32133390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4052580 - 4052611
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  4052580 ccctacccattgggtacccattgccatcccta 4052611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13312656 - 13312625
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  13312656 ccctacccattgggtacccattgccatcccta 13312625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28220891 - 28220860
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  28220891 ccctacccattgggtacccattgccatcccta 28220860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 35978693 - 35978724
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  35978693 ccctacccattgggtacccattgccatcccta 35978724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48964558 - 48964589
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  48964558 ccctacccattgggtacccattgccatcccta 48964589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19506306 - 19506273
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaa 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  19506306 ccctacccattggatacccattgccatccctaaa 19506273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4893477 - 4893509
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  4893477 ccctatccattgggtacccattgccatccctaa 4893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29054790 - 29054822
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  29054790 ccctatccattgggtacccattgccatccctaa 29054822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29185010 - 29184978
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  29185010 ccctatccattgggtacccattgccatccctaa 29184978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30489589 - 30489557
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  30489589 ccctacccattggctacccattgccatccctaa 30489557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33363080 - 33363112
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  33363080 ccctatccattgggtacccattgccatccctaa 33363112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40094694 - 40094726
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  40094694 ccctacccattggatacccattgccatccctaa 40094726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42069302 - 42069334
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||| ||||||||||||||||||    
T  42069302 ccctacccattgggcacccattgccatccctaa 42069334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 49359881 - 49359848
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  49359881 ccctacccattgggtacccattgccatccctaaa 49359848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 49374711 - 49374678
Alignment:
Q  2 cctacccattgggtacccattgccatccctaaat 35  Q
    ||||||||||||||||||||||||||||||||||    
T  49374711 cctacccattgggtacccattgccatccctaaat 49374678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24987595 - 24987627
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  24987595 ccctacccattgggtacccattgccatccctaa 24987627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25467405 - 25467373
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  25467405 ccctacccattgggtacccattgccatccctaa 25467373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44792831 - 44792863
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  44792831 ccctacccattgggtacccattgccatccctaa 44792863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5908150 - 5908119
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  5908150 ccctacccattgggtacccattgccatcccta 5908119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48079993 - 48079962
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  48079993 ccctacccattgggtacccattgccatcccta 48079962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50481252 - 50481283
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  50481252 ccctacccattgggtacccattgccatcccta 50481283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19454704 - 19454672
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  19454704 ccctatccattgggtacccattgccatccctaa 19454672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46181143 - 46181111
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  46181143 ccctacccattgggtacccattgccatccctaa 46181111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 5023374 - 5023405
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  5023374 ccctacccattgggtacccattgccatcccta 5023405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 16567497 - 16567466
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  16567497 ccctacccattgggtacccattgccatcccta 16567466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 16598165 - 16598196
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  16598165 ccctacccattgggtacccattgccatcccta 16598196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 19804968 - 19804937
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  19804968 ccctacccattgggtacccattgccatcccta 19804937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48645995 - 48646030
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaatc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48645995 ccctacccattgggtactcattgccatccctaaatc 48646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28067455 - 28067489
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaat 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  28067455 ccctgcccattgggtacccattgccatccctaaat 28067489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46783018 - 46782984
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  46783018 ccctaaccattgggtacccattgccatccctaaat 46782984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17172403 - 17172435
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  17172403 ccctatccattgggtacccattgccatccctaa 17172435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44300643 - 44300611
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  44300643 ccctatccattgggtacccattgccatccctaa 44300611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 240650 - 240681
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  240650 ccctacccattgggtacccattgccatcccta 240681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6337164 - 6337133
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  6337164 ccctacccattgggtacccattgccatcccta 6337133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 13534372 - 13534403
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  13534372 ccctacccattgggtacccattgccatcccta 13534403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1221893 - 1221925
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  1221893 ccctatccattgggtacccattgccatccctaa 1221925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 6799608 - 6799636
Alignment:
Q  4 tacccattgggtacccattgccatcccta 32  Q
    |||||||||||||||||||||||||||||    
T  6799608 tacccattgggtacccattgccatcccta 6799636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24447304 - 24447336
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  24447304 ccctatccattgggtacccattgccatccctaa 24447336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31070727 - 31070695
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||| ||||||||||||||||||||||||||    
T  31070727 ccctactcattgggtacccattgccatccctaa 31070695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14645240 - 14645209
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  14645240 ccctacccattgggtacccattgccatcccta 14645209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 15719365 - 15719396
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  15719365 ccctacccattgggtacccattgccatcccta 15719396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31149879 - 31149909
Alignment:
Q  1 ccctacccattgggtacccattgccatccct 31  Q
    |||||||||||||||||||||||||||||||    
T  31149879 ccctacccattgggtacccattgccatccct 31149909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7977955 - 7977923
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  7977955 ccctacccattgggtaaccattgccatccctaa 7977923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14087588 - 14087560
Alignment:
Q  1 ccctacccattgggtacccattgccatcc 29  Q
    |||||||||||||||||||||||||||||    
T  14087588 ccctacccattgggtacccattgccatcc 14087560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14088193 - 14088161
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  14088193 ccctacccattgggtacccattgtcatccctaa 14088161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33347259 - 33347291
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  33347259 ccctgcccattgggtacccattgccatccctaa 33347291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34718967 - 34718999
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  34718967 ccctatccattgggtacccattgccatccctaa 34718999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35852015 - 35851983
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||| ||||||||||||||||||    
T  35852015 ccctacccattgggaacccattgccatccctaa 35851983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36470633 - 36470665
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  36470633 ccctatccattgggtacccattgccatccctaa 36470665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41692651 - 41692683
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  41692651 ccctatccattgggtacccattgccatccctaa 41692683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 668155 - 668186
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  668155 ccctacccattgggtacccattgccatcccta 668186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 23231657 - 23231626
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  23231657 ccctacccattgggtacccattgccatcccta 23231626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25424674 - 25424643
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  25424674 ccctacccattgggtacccattgccatcccta 25424643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 33867730 - 33867761
Alignment:
Q  1 ccctacccattgggtacccattgccatcccta 32  Q
    ||||||||||||||||||||||||||||||||    
T  33867730 ccctacccattgggtacccattgccatcccta 33867761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31440820 - 31440850
Alignment:
Q  1 ccctacccattgggtacccattgccatccct 31  Q
    |||||||||||||||||||||||||||||||    
T  31440820 ccctacccattgggtacccattgccatccct 31440850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 4480979 - 4480950
Alignment:
Q  4 tacccattgggtacccattgccatccctaa 33  Q
    ||||||||||||||||||||||||||||||    
T  4480979 tacccattgggtacccattgccatccctaa 4480950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4289560 - 4289528
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  4289560 ccctatccattgggtacccattgccatccctaa 4289528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44070590 - 44070622
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||| ||||||||||||||||||||    
T  44070590 ccctacccattgagtacccattgccatccctaa 44070622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1667192 - 1667160
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  1667192 ccctacccatttggtacccattgccatccctaa 1667160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2472465 - 2472497
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  2472465 ccctacccattggatacccattgccatccctaa 2472497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19643698 - 19643730
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||||||||| ||||||||||    
T  19643698 ccctacccattgggtacccattaccatccctaa 19643730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20216131 - 20216099
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  20216131 ccctatccattgggtacccattgccatccctaa 20216099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20235729 - 20235697
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||| |||||||||||||||||||||||||||    
T  20235729 ccctatccattgggtacccattgccatccctaa 20235697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24891603 - 24891635
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  24891603 ccctacccattaggtacccattgccatccctaa 24891635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37226957 - 37226989
Alignment:
Q  1 ccctacccattgggtacccattgccatccctaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  37226957 ccctacccattgggtatccattgccatccctaa 37226989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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