View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16198_low_1 (Length: 467)
Name: NF16198_low_1
Description: NF16198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16198_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 19056014 - 19056458
Alignment:
| Q |
9 |
agatgaaaacaatctaatgtatgcttggttgctttttccttgtgtattattgtacgaaatagcactatgaattgttatctgaaagacacgacacatctgg |
108 |
Q |
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| T |
19056014 |
agatgaaaacaatctaatgtatgcttggttgctttttccttgtgtattattgtacgaaatagcattatcatttgttatctgaaagacacgacacatctgg |
19056113 |
T |
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| Q |
109 |
ataagatgaagagcatgttccatgtgcattagtgcatgatgcatgtggttcccctccagcaacactagttatgttaatatgatcgattataatgttgtcg |
208 |
Q |
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| T |
19056114 |
ataagatgaagagcatgtcccatgtgcattagtgcatgatgcatgtggttcccctccagcaacactagttatgttaatatgatcgattataatgttgtcg |
19056213 |
T |
|
| Q |
209 |
cacccaatattagggtcacaatttaattggaccgtattctcattaacggaggttccatgtatgttgaggaaagtaacatcactcactttcactacttcgc |
308 |
Q |
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| T |
19056214 |
cacccaattttagggtcacaatttaattggaccgtattctcattaacggaggttccatgtatgttgaggaaagtaacatcactcactttcactacttcgc |
19056313 |
T |
|
| Q |
309 |
tagaactatcatatatatgaggattgtagttttgattaataataatagggttcttgacttctgcaagtttaatattttcgtatgtgatcttccttgcata |
408 |
Q |
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| T |
19056314 |
tagaactatcatatatatgaggattgtagttttgattaataataatagggttcttgacttctacaagtttaatattttcgtatgtgatcttccttgcata |
19056413 |
T |
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| Q |
409 |
cccacttcctccctaattcaaacaacaaaacatatatgttattat |
453 |
Q |
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| T |
19056414 |
cccacttcctccctaattcaaacaacaaaacatatatgttattat |
19056458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 417
Target Start/End: Original strand, 21365702 - 21365835
Alignment:
| Q |
283 |
aacatcactcactttcactacttcgctagaactatcatatatatgaggattgtagttttgattaataataatagggttcttgacttctgcaagtttaata |
382 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||| |||| ||| || | ||||| || ||| | ||||||||||||| | ||||||||||| |
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| T |
21365702 |
aacatcactcactttcaatactttgctagcactatcatacc-atgacgatcataatattgatcaacaatcagagggttcttgactcatccaagtttaata |
21365800 |
T |
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| Q |
383 |
ttttcgtatgtgatcttccttgcatacccacttcc |
417 |
Q |
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| T |
21365801 |
tcttcgtatgcgacattccttgcatacccacttcc |
21365835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 38097637 - 38097572
Alignment:
| Q |
380 |
atattttcgtatgtgatcttccttgcatacccacttcctccctaattcaaacaacaaaacatatat |
445 |
Q |
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| T |
38097637 |
atatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatatat |
38097572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 21552006 - 21551928
Alignment:
| Q |
355 |
agggttcttgacttctgcaagtttaatattttcgtatgtgatcttccttgcatacccacttcctccctaattcaaacaa |
433 |
Q |
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| T |
21552006 |
agggttctcgacttcaacaagtgtaatatcttcgtatttaatgttccttgcatatccagatccaccctaattcaaacaa |
21551928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 21552092 - 21552048
Alignment:
| Q |
257 |
gaggttccatgtatgttgaggaaagtaacatcactcactttcact |
301 |
Q |
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| T |
21552092 |
gaggttccatgtatgttgctgaaagtaacatcacttacttccact |
21552048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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