View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16199_high_2 (Length: 347)

Name: NF16199_high_2
Description: NF16199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16199_high_2
NF16199_high_2
[»] chr7 (7 HSPs)
chr7 (1-335)||(13474888-13475222)
chr7 (5-335)||(11657642-11657973)
chr7 (1-265)||(22612416-22612680)
chr7 (261-335)||(22611420-22611494)
chr7 (1-92)||(48378930-48379020)
chr7 (1-92)||(13773830-13773921)
chr7 (57-96)||(37943953-37943992)
[»] chr3 (10 HSPs)
chr3 (1-335)||(21100446-21100778)
chr3 (30-335)||(5941486-5941790)
chr3 (72-334)||(19186880-19187141)
chr3 (24-335)||(17793395-17793705)
chr3 (24-335)||(19101835-19102145)
chr3 (63-332)||(15958028-15958296)
chr3 (1-89)||(17959161-17959249)
chr3 (1-92)||(14057675-14057766)
chr3 (32-96)||(14479496-14479560)
chr3 (19-92)||(16942074-16942147)
[»] chr2 (5 HSPs)
chr2 (57-335)||(24788580-24788859)
chr2 (1-335)||(44583756-44584081)
chr2 (57-324)||(23651639-23651893)
chr2 (74-332)||(21553786-21554042)
chr2 (57-94)||(13362070-13362107)
[»] scaffold0166 (1 HSPs)
scaffold0166 (70-333)||(3417-3681)
[»] chr5 (3 HSPs)
chr5 (70-333)||(24760920-24761184)
chr5 (33-94)||(23950022-23950082)
chr5 (32-96)||(24829911-24829974)
[»] scaffold0145 (1 HSPs)
scaffold0145 (57-335)||(14720-14999)
[»] chr4 (7 HSPs)
chr4 (24-335)||(16282716-16283028)
chr4 (19-335)||(11558457-11558772)
chr4 (72-338)||(12230906-12231171)
chr4 (57-332)||(8808797-8809072)
chr4 (132-335)||(18218215-18218418)
chr4 (1-90)||(17338817-17338906)
chr4 (57-90)||(11332613-11332646)
[»] chr6 (4 HSPs)
chr6 (3-172)||(15118940-15119108)
chr6 (1-89)||(20145859-20145948)
chr6 (1-89)||(22186891-22186980)
chr6 (32-96)||(7680599-7680663)
[»] scaffold0218 (1 HSPs)
scaffold0218 (1-92)||(16533-16624)
[»] scaffold0091 (1 HSPs)
scaffold0091 (1-92)||(31185-31276)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-92)||(26065-26156)
[»] chr1 (1 HSPs)
chr1 (1-92)||(51624858-51624948)
[»] scaffold0061 (2 HSPs)
scaffold0061 (1-87)||(16665-16751)
scaffold0061 (1-87)||(25723-25809)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-94)||(71282-71376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-92)||(132719-132810)
[»] chr8 (2 HSPs)
chr8 (58-205)||(17883280-17883425)
chr8 (58-94)||(26859181-26859217)
[»] scaffold0601 (1 HSPs)
scaffold0601 (30-94)||(4127-4191)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 13475222 - 13474888
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||  ||||||||||||| |||    
T  13475222 ccatcataacaacactcttactataacccctttacagccccacaatagaatattaaaccctagagatgaagagattcttccctttacctcgaatccgtag 13475123  T
Q  101 aaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  13475122 aaaccttcgatttgcctcgatgttgctgcactagggttcagcttctctccctctggttttcttcttccttttctctaattagcaaaactgatttctaatc 13475023  T
Q  201 cctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  13475022 cctaatactcctatttatatttgggctcactgttttctataattgtattcatttcctatgcactactcttttacttctcccctcccccacttattataat 13474923  T
Q  301 cttactttctacacccacgactctttatttatttt 335  Q
    ||||||||||||| |||||||||||||||||||||    
T  13474922 cttactttctacatccacgactctttatttatttt 13474888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 11657642 - 11657973
Alignment:
Q  5 cataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaaac 104  Q
    ||||||||||||  |||| |||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||| | |||||||||||||| |||||||    
T  11657642 cataacaacacttctactgtaacccctttacagcctcacaacaaaatattaaaccctagaaatgaagagattctcacccttacctcgaatccgtagaaac 11657741  T
Q  105 cttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatcccta 204  Q
    ||| | |||| || ||||| |||||||||||||||| ||||||||||| |  ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  11657742 ctttggtttggcttgatgtagctgcactagggttcctcttctctccctcttcttttcttctcccttttctctgattagcaaaactgatttctaatcccta 11657841  T
Q  205 atactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattat-aatctt 303  Q
    ||| ||||||||||||||||||||||| ||  |||||||||| ||||||| |||  ||||||||||||||||||||||||||||| ||||||| ||||||    
T  11657842 atattcctatttatatttgggctcactattcgctataattgtcttcctttcctacacactactcttttacttctcccctcccccacttattataaatctt 11657941  T
Q  304 actttctacacccacgactctttatttatttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  11657942 actttctacacccacgactctttatttatttt 11657973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 22612680 - 22612416
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatag 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||   ||||||| ||||||||||||||||||||||||| |||||||||||||| |||    
T  22612680 ccatcataacaacactcctactataacccctttacatccccacaagccaatattaaaccctagagatgaagagattctcccccttacctcgaatccgtag 22612581  T
Q  101 aaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatc 200  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||  | || ||||||||| |||||| ||| ||||| |||||||||||||||||    
T  22612580 aaaccttcggtttggctcgatgttgttgcactagggttccgcttctctctgtctgcttttcttctcccttttctctgattagaaaaactgatttctaatc 22612481  T
Q  201 cctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcacta 265  Q
    ||||||| ||||||||||||||||||||||  ||  |||||||||| ||||||| ||| ||||||    
T  22612480 cctaatattcctatttatatttgggctcaccattcgctataattgtcttcctttcctacgcacta 22612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 22611494 - 22611420
Alignment:
Q  261 cactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttatttt 335  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22611494 cactactcttttacttctcccctcccccacttattataatcttactttctacacccacgactctttatttatttt 22611420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 48378930 - 48379020
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  48378930 ccatcataacaacactcatactctaacccctttacaaccctacaacaaaatattaaaccctagagatgaagagattctccc-cttacctcga 48379020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13773921 - 13773830
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| |||| || ||||||||||||||||||||||  | ||||||||||    
T  13773921 ccatcataacaacactcatactataacccctttacaaccctacaacaaaataataaaccctagagatgaagagattctatcccttacctcga 13773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 37943992 - 37943953
Alignment:
Q  57 accctagagatgaagagattctccctcttacctcgaatcc 96  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  37943992 accctagagatgaatagattctccctcttaccttgaatcc 37943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 21100778 - 21100446
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatag 100  Q
    |||| |||||||||||| | || ||||| |||||||| ||||||||| ||||||| |||||||| |||||||||||||||| |||||||| |||||||||    
T  21100778 ccattataacaacactcatcctctaacctctttacagacccacaacaaaatattaaaccctagatatgaagagattctccc-cttacctcaaatccatag 21100680  T
Q  101 aaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatc 200  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||  || || |||||| |||||  ||| || ||||||| |||||| |||||    
T  21100679 aaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccccctgcttctcttctccctttactctgatcagcaaaattgatttttaatc 21100580  T
Q  201 cctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataat 300  Q
    ||||||| || ||||||||||||||||| |   || |||||||||| |||||||  || ||| |||||||||||||||||||||||||| |||||| |||    
T  21100579 cctaatattcttatttatatttgggctcgc-aattgctataattgtcttcctttcttacgcagtactcttttacttctcccctcccccacttattaaaat 21100481  T
Q  301 cttactttctacacccacgactctttatttatttt 335  Q
    ||||||||| |||||||||||||||||||||||||    
T  21100480 cttactttccacacccacgactctttatttatttt 21100446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 5941790 - 5941486
Alignment:
Q  30 ctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgc 129  Q
    ||||| |||||||||||| ||||||| |||||| ||||||| |||||||| | |||||||| |||||||||||||||| | |||| | |||||||||| |    
T  5941790 ctttatagccccacaacaaaatatta-accctatagatgaatagattctctcccttacctcaaatccatagaaacctttggtttgacccgatgttgctac 5941692  T
Q  130 actagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctca 229  Q
    ||||||||| |||||||||||||||| || |||||| |||||| ||| || ||||||||||||||||||||||||||| || ||||||||| | ||||||    
T  5941691 actagggtttcgcttctctccctatgcttctcttctcccttttctctgatcagcaaaactgatttctaatccctaatattcatatttatatctaggctca 5941592  T
Q  230 ctgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatt 329  Q
    || || ||||||||||  |||||||| |||||| |||||||||||||| ||||| || || |||||| |||||||||||||||||||| |||||||||||    
T  5941591 ctattctctataattgccttccttttttatgcaatactcttttacttccccccttcctcacttattaaaatcttactttctacacccatgactctttatt 5941492  T
Q  330 tatttt 335  Q
    ||||||    
T  5941491 tatttt 5941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 72 - 334
Target Start/End: Original strand, 19186880 - 19187141
Alignment:
Q  72 agattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttt 171  Q
    |||||||||  |||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||| || ||||||||| |||||    
T  19186880 agattctcctccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgccctagggttccgcttctctccctctgcttttcttctcccttt 19186979  T
Q  172 tttctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactcttt 271  Q
    | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||  |||||||||| ||||||| |||  |||||||||||    
T  19186980 tctcta-ttagcaaaactgatttctaatccctaatattcctatttatattttggctcattattcgctataattgtcttcctttcctacacactactcttt 19187078  T
Q  272 tacttctcccctcccccatttattataatcttactttctacacccacgactctttatttattt 334  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||| ||||||| ||||||    
T  19187079 tacttctcccctcccccacttattataattttgctttctacacccacgtctctttaattattt 19187141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 335
Target Start/End: Original strand, 17793395 - 17793705
Alignment:
Q  24 taacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgt 123  Q
    ||||| ||| |||||||||||| | ||   || |||||||||||||| |||||||||| |||||||||||||  |||||||||||| |||| ||||||||    
T  17793395 taacctcttcacagccccacaataaaaacataaaccctagagatgaatagattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgt 17793494  T
Q  124 tgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttatatttg 223  Q
    |||||||||| |||||||||||||| ||| || | ||||||| |||||| |||| | ||||||||| || | ||| |||||||| |||||||||||||||    
T  17793495 tgctgcactacggttccgcttctcttcctctgctattcttctcccttttctcta-tcagcaaaacttatatgtaacccctaatattcctatttatatttg 17793593  T
Q  224 ggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactc 323  Q
     ||||||| ||  |||||||||| ||| ||| ||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||  ||||    
T  17793594 cgctcactattcactataattgtcttcttttcctatgcactactcttttacttatccccttccccacttattgtaatcttactttctacacccagaactc 17793693  T
Q  324 tttatttatttt 335  Q
    ||||||||||||    
T  17793694 tttatttatttt 17793705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 335
Target Start/End: Original strand, 19101835 - 19102145
Alignment:
Q  24 taacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgt 123  Q
    ||||| ||| |||||||||||| | ||   || |||||||||||||| |||||||||| |||||||||||||  |||||||||||| |||| ||||||||    
T  19101835 taacctcttcacagccccacaataaaaacataaaccctagagatgaatagattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgt 19101934  T
Q  124 tgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttatatttg 223  Q
    |||||||||| |||||||||||||| ||| || | ||||||| |||||| |||| | ||||||||| || | ||| |||||||| |||||||||||||||    
T  19101935 tgctgcactacggttccgcttctcttcctctgctattcttctcccttttctcta-tcagcaaaacttatatgtaacccctaatattcctatttatatttg 19102033  T
Q  224 ggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactc 323  Q
     ||||||| ||  |||||||||| ||| ||| ||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||  ||||    
T  19102034 cgctcactattcactataattgtcttcttttcctatgcactactcttttacttatccccttccccacttattgtaatcttactttctacacccagaactc 19102133  T
Q  324 tttatttatttt 335  Q
    ||||||||||||    
T  19102134 tttatttatttt 19102145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 332
Target Start/End: Complemental strand, 15958296 - 15958028
Alignment:
Q  63 gagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttct 162  Q
    |||||||| |||||||||| |||||||| ||||| |||||||||||| || | ||  |||| |||||||||| ||| ||| | ||||| | |  || |||    
T  15958296 gagatgaatagattctcccccttacctcaaatccgtagaaaccttcggttggactaaatgtcgctgcactagagtttcgcatttctccttcttcttctct 15958197  T
Q  163 tcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgca 262  Q
    | |  ||||| ||| |||||||||||| ||||||||||||||||| || ||||||||  |||||||||| ||   |||||||    ||||||  |||||     
T  15958196 tatctcttttctctgattagcaaaactaatttctaatccctaatattcttatttatacatgggctcactattcgttataatttccctcctttcatatgcg 15958097  T
Q  263 ctactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttat 332  Q
    ||||  ||||||||||||| | |||||  ||||  ||||||||||||||||||  |||| | ||||||||    
T  15958096 ctacaattttacttctcccat-ccccacatatttcaatcttactttctacacctccgaccccttatttat 15958028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 17959249 - 17959161
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacct 89  Q
    ||||||||||||||||| |||| ||||||||||||| |||   | || ||||||| ||||||||||||||||||||||||| |||||||    
T  17959249 ccatcataacaacactcatactctaacccctttacaacccttaatcaaaatattaaaccctagagatgaagagattctcccccttacct 17959161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 14057766 - 14057675
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    |||| |||||||||||| ||||  ||||||| |||| ||| ||| || |||| || |||||||||||||||||||||||||  |||||||||    
T  14057766 ccatgataacaacactcatactccaacccctctacaaccctacagcaaaataataaaccctagagatgaagagattctcccctttacctcga 14057675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 14479560 - 14479496
Alignment:
Q  32 ttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatcc 96  Q
    ||||||||||||||   |||| || |||||||||||||| |||||||||| ||||||||||||||    
T  14479560 ttacagccccacaatgaaataataaaccctagagatgaaaagattctcccccttacctcgaatcc 14479496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 16942147 - 16942074
Alignment:
Q  19 tactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    |||| ||||||||||||| ||| | | || |||| || ||||||||||||||||||||||||  ||||||||||    
T  16942147 tactctaacccctttacaaccctatagcaaaataataaaccctagagatgaagagattctccgccttacctcga 16942074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 57 - 335
Target Start/End: Original strand, 24788580 - 24788859
Alignment:
Q  57 accctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatgg 156  Q
    |||||||||||||| | ||| |||| |||||||||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||||||| ||     
T  24788580 accctagagatgaatatattatcccccttacctcgaatccgtagaaaccttcggtttggctagaagttgctgcactagggttccgcttctctccctttgt 24788679  T
Q  157 ttttcttcttccttttt-tctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattcctttt 255  Q
    ||||||||| ||||||| ||  || ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||| |||||||     
T  24788680 ttttcttctccctttttctccgatcagcaaaactaatttctaatccctaatattcctatttatatttgggctcactattcgctataattgtcttcctttc 24788779  T
Q  256 ctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttatttt 335  Q
     || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  24788780 atacgcactactcttttacttctcccctcccccacttattataatcttgctttctacacccacgactctttatttatttt 24788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 44584081 - 44583756
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatag 100  Q
    ||||||||||||||||  ||||||||| | |||||| |||||||||||||||||| |||||||||| | |||||||||||| |||||||| ||||| |||    
T  44584081 ccatcataacaacactgctactataactcatttacatccccacaacagaatattaaaccctagagacggagagattctcccccttacctcaaatccgtag 44583982  T
Q  101 aaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatc 200  Q
    ||||||| | |||| || ||||||||||||||||| |||||||||||||| | || ||||| ||| |||||         ||||||||||||||||||||    
T  44583981 aaacctttggtttgacttgatgttgctgcactaggattccgcttctctccatctgcttttcctctcccttt---------agcaaaactgatttctaatc 44583891  T
Q  201 cctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataat 300  Q
    ||||||| ||||||||||||||||||||| | ||  |||||||||| || |||| |||  |||||||||||||||||||||| ||||  ||| |||||||    
T  44583890 cctaatattcctatttatatttgggctcattattcgctataattgtcttgctttcctacacactactcttttacttctccccacccctttttgttataat 44583791  T
Q  301 cttactttctacacccacgactctttatttatttt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  44583790 cttactttctacacccacgactctttatttatttt 44583756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 324
Target Start/End: Complemental strand, 23651893 - 23651639
Alignment:
Q  57 accctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatgg 156  Q
    |||||||||||||| |||||||||| |||||||||||||  |||| ||||||  |||| ||||||||||||||| ||||||||||||||||| ||| ||     
T  23651893 accctagagatgaatagattctcccccttacctcgaatctgtagataccttcagtttggctcgatgttgctgcattagggttccgcttctctacctttg- 23651795  T
Q  157 ttttcttcttccttttttctaattagcaaa-actgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattcctttt 255  Q
           ||||      ||| || ||| || ||||||||||||||||||||| |||||||||||| |||| |||||  | |||||||||| ||| ||||     
T  23651794 -------cttc------tctgatcagccaatactgatttctaatccctaatattcctatttatatatgggttcactaatctctataattgcatttcttta 23651708  T
Q  256 ctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactct 324  Q
    ||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  23651707 ctacgcactactcttttacttctcccctcccccacttattaaaatcttactttctacacccacgactct 23651639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 332
Target Start/End: Complemental strand, 21554042 - 21553786
Alignment:
Q  74 attctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttt 173  Q
    |||||||| |||||||||||||| |||||||||||| |||| |||| ||| | |||||||| |||||| |||||||| | || || ||||||  ||||      
T  21554042 attctcccccttacctcgaatccgtagaaaccttcgttttggctcggtgtcgttgcactagagttccgtttctctccttctgcttctcttctctctttac 21553943  T
Q  174 tctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactctttta 273  Q
    ||| || | ||||||||||||||||||||||||| || ||||||||  ||| |||||| ||   |||  |  |  |||||| ||| |  ||||| |||||    
T  21553942 tctgatcaacaaaactgatttctaatccctaatattcttatttatacatggactcactattcgttatggt--tcctcctttcctacgtgctactatttta 21553845  T
Q  274 cttctcccctcccccatttattataatcttactttctacacccacgactctttatttat 332  Q
     |||||||||||||||  ||||   |||||||| ||||||||  |||||||||||||||    
T  21553844 attctcccctcccccacgtatttagatcttactctctacacctccgactctttatttat 21553786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 13362070 - 13362107
Alignment:
Q  57 accctagagatgaagagattctccctcttacctcgaat 94  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  13362070 accctagagatgaagagattctcccccttaccttgaat 13362107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 70 - 333
Target Start/End: Original strand, 3417 - 3681
Alignment:
Q  70 agagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttcct 169  Q
    |||||||| |||||||||||||||||| |||||||||||| |||| |||| ||||| ||||||||||||| | ||||||||||||| |  |||||| |||    
T  3417 agagattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgctcctcttctccct 3516  T
Q  170 tttttctaattagc-aaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactc 268  Q
    ||| ||| || ||| |||||||||||||||||| ||||| |||||||||||| || |||||||  | |||||||||   || |||| ||| |||||||||    
T  3517 tttctctgatcagccaaaactgatttctaatccataatattcctatttatatatgagctcactaatctctataatttcctttctttcctacgcactactc 3616  T
Q  269 ttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttatt 333  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  3617 ttttacttctctcgtcccccacttattaaaatcttactttctacacccacgactctttatttatt 3681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 70 - 333
Target Start/End: Original strand, 24760920 - 24761184
Alignment:
Q  70 agagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttcct 169  Q
    |||||||| |||||||||||||||||| |||||||||||| |||| |||| ||||| ||||||||||||| | ||||||||||||| |  |||||| |||    
T  24760920 agagattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgctcctcttctccct 24761019  T
Q  170 tttttctaattagc-aaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactc 268  Q
    ||| ||| || ||| |||||||||||||||||| ||||| |||||||||||| || |||||||  | |||||||||   || |||| ||| |||||||||    
T  24761020 tttctctgatcagccaaaactgatttctaatccataatattcctatttatatatgagctcactaatctctataatttcctttctttcctacgcactactc 24761119  T
Q  269 ttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttatt 333  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  24761120 ttttacttctctcgtcccccacttattaaaatcttactttctacacccacgactctttatttatt 24761184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 23950082 - 23950022
Alignment:
Q  33 tacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaat 94  Q
    |||||||||| ||||||| |||| |||||||||||||| |||||||||| ||||||||||||    
T  23950082 tacagcccca-aacagaaaattaaaccctagagatgaaaagattctcccccttacctcgaat 23950022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 24829974 - 24829911
Alignment:
Q  32 ttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatcc 96  Q
    ||||||||||||||   |||| || ||||||||||||||| ||||||||| ||||||||||||||    
T  24829974 ttacagccccacaatgaaataataaaccctagagatgaagcgattctccc-cttacctcgaatcc 24829911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 335
Target Start/End: Original strand, 14720 - 14999
Alignment:
Q  57 accctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatgg 156  Q
    |||||| ||||||| |||||||||| ||||||||||| || ||||||| || | |||| ||||||||||||||| ||||||||| ||||| || || ||     
T  14720 accctatagatgaatagattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttccacttctttctctttgc 14819  T
Q  157 ttttcttcttccttttttctaattag-caaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattcctttt 255  Q
    || | |||| |||||| ||| ||||| ||||||||||||||||||||||||| |||||| ||||  ||||||||||  | |||| ||||   ||  |||     
T  14820 ttcttttctcccttttctcttattagccaaaactgatttctaatccctaatattcctatatataaatgggctcactaatatctagaattacctttatttc 14919  T
Q  256 ctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttatttt 335  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  14920 ctatgcactactcttttacttctcccctcccccacttattaaaaacttactttctacacccacgactctttatttatttt 14999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 24 - 335
Target Start/End: Complemental strand, 16283028 - 16282716
Alignment:
Q  24 taacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgt 123  Q
    ||||| ||||||| |||| ||| ||||   || |||||| ||||||| |||||||||| ||||||||||| || ||||||| || | |||| ||||||||    
T  16283028 taacctctttacaaccccccaatagaaacataaaccctatagatgaatagattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgt 16282929  T
Q  124 tgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattag-caaaactgatttctaatccctaatactcctatttatattt 222  Q
    ||||||| ||||||||| ||||| || || || || | |||| ||||||  || ||||| ||||||||||||||||||||||||| |||||| ||||  |    
T  16282928 tgctgcagtagggttccacttctttctctttgcttcttttctcccttttcccttattagccaaaactgatttctaatccctaatattcctatatataaat 16282829  T
Q  223 gggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgact 322  Q
    |||||||||  | |||| ||||   ||  ||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||    
T  16282828 gggctcactaatatctagaattacctttatttcctatgcactactcttttacttctcccctcccccacttattaaaaacttactttctacacccacgact 16282729  T
Q  323 ctttatttatttt 335  Q
    |||||||||||||    
T  16282728 ctttatttatttt 16282716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 11558457 - 11558772
Alignment:
Q  19 tactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctc 118  Q
    |||| ||||| ||||||| |||||||| | ||   || ||||||||| |||  |||||||||  ||||||| |||||| |||||||||||| |||| |||    
T  11558457 tactctaacctctttacatccccacaataaaaatataaaccctagagttgattagattctcctccttacctagaatccgtagaaaccttcggtttggctc 11558556  T
Q  119 gatgttgctgcactagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttat 218  Q
    ||||||| |||| ||||||||| ||||||||| | || || ||||| | ||||| ||| || |||||||||||||||||| |||||||| ||| ||||||    
T  11558557 gatgttgttgcattagggttccacttctctccatctgcttctcttc-tacttttctctcatcagcaaaactgatttctaaaccctaatattcccatttat 11558655  T
Q  219 atttgggctcactgttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccac 318  Q
    || ||||||||||  |   ||||||||  ||  |||  || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  11558656 atatgggctcactaatcgttataattgcctttatttcttacgcactactcttttacttctcccctcccccacttattaaaatcttactttctacacccac 11558755  T
Q  319 gactctttatttatttt 335  Q
    ||||||| |||||||||    
T  11558756 gactcttcatttatttt 11558772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 72 - 338
Target Start/End: Original strand, 12230906 - 12231171
Alignment:
Q  72 agattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttccttt 171  Q
    ||||| |||| |||||||||||||  |||||||||||  |||| || ||||||||| ||| ||||||| |||||||||||| || || |||||| |||||    
T  12230906 agattatcccccttacctcgaatctgtagaaaccttcagtttggcttgatgttgctacacgagggttctgcttctctccctttgcttctcttctcccttt 12231005  T
Q  172 tttctaattagc-aaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttctatgcactactctt 270  Q
    | |||| | ||| |||| ||||||||||||||||||| || |||||||||  ||||||| |  | ||||||||||  || |||| ||| |||||||||||    
T  12231006 tctcta-taagccaaaattgatttctaatccctaatattcttatttatatc-gggctcattaatctctataattgcttttctttcctaagcactactctt 12231103  T
Q  271 ttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttattttctt 338  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  12231104 ttacttctctcctcccccacttattaaaatcttactttctacactcacgactctttatttattttctt 12231171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 57 - 332
Target Start/End: Original strand, 8808797 - 8809072
Alignment:
Q  57 accctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatgg 156  Q
    |||||||||||||| |||||||||| |||||||| ||||| |||||||||| | |||| |||||| | |||||||||||||||||| ||||||| | ||     
T  8808797 accctagagatgaatagattctcccccttacctcaaatccgtagaaacctttggtttgactcgatatcgctgcactagggttccgcctctctccttctgc 8808896  T
Q  157 ttttcttcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctcactgttttctataattgtattccttttc 256  Q
    || | || |  ||||| | | || |||||||||||||||||||| ||| || || ||||||||| |||| ||||| ||   |||  ||||  || ||| |    
T  8808897 ttcttttatctcttttctttgatcagcaaaactgatttctaatctctattattcttatttatatctgggatcactattcgttatggttgtcctcttttcc 8808996  T
Q  257 tatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttatttat 332  Q
    ||||  ||||  ||||||||||||||||| ||| |||||  ||||||||||||||||||| |||||| ||||||||    
T  8808997 tatgtcctacaattttacttctcccctccaccacttatttaaatcttactttctacaccctcgactccttatttat 8809072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 335
Target Start/End: Complemental strand, 18218418 - 18218215
Alignment:
Q  132 tagggttccgcttctctccctatggttttcttcttccttttttctaattagcaaaactgatttctaatccctaatactcctatttatatttgggctcact 231  Q
    ||||||||| ||||||||| | || || |||||| ||||||  || || |||||||||||||||||| |||||||| ||  |||||||| ||||||||||    
T  18218418 tagggttccacttctctccatctgcttctcttctaccttttcgctcataagcaaaactgatttctaacccctaatattctcatttatatatgggctcact 18218319  T
Q  232 gttttctataattgtattccttttctatgcactactcttttacttctcccctcccccatttattataatcttactttctacacccacgactctttattta 331  Q
      |   ||||||||   |  ||| ||| |||||||||||||||||||||| ||||||  |||||  |||||||||||||| ||| |||||||||||||||    
T  18218318 aatcgttataattgccattatttgctacgcactactcttttacttctcccatcccccgcttatttaaatcttactttctaaaccaacgactctttattta 18218219  T
Q  332 tttt 335  Q
    ||||    
T  18218218 tttt 18218215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17338817 - 17338906
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctc 90  Q
    |||| |||||| ||||| | || ||| | ||||||| |||||||||| ||||||| ||||||||||| |||||||||||||  |||||||    
T  17338817 ccattataacaccactcattctctaatctctttacatccccacaacaaaatattaaaccctagagataaagagattctcccatttacctc 17338906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 11332613 - 11332646
Alignment:
Q  57 accctagagatgaagagattctccctcttacctc 90  Q
    |||||| |||||||||||||||||||||||||||    
T  11332613 accctatagatgaagagattctccctcttacctc 11332646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 15118940 - 15119108
Alignment:
Q  3 atcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatccatagaa 102  Q
    ||||||||||||||  || |||||||||||||||  |||||||   ||||||| | |||||||||||||||||||| || |||||||||||| | |||||    
T  15118940 atcataacaacactactattataacccctttacattcccacaaacaaatattaaatcctagagatgaagagattcttccccttacctcgaat-cgtagaa 15119038  T
Q  103 accttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggttttcttcttcctttt 172  Q
    |||||||||||  |||||||||||||||||||||||| |||||||||| | |  ||||||||| ||||||    
T  15119039 accttcgatttagctcgatgttgctgcactagggttctgcttctctccgtcttcttttcttctccctttt 15119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20145948 - 20145859
Alignment:
Q  1 ccatcataacaacactcttactataacccc-tttacagccccacaacagaatattataccctagagatgaagagattctccctcttacct 89  Q
    |||||||||| |||||| |||  ||||||| |||| ||||||||||||||||| || |||| ||||||||||||||||| || |||||||    
T  20145948 ccatcataaccacactcatacattaaccccctttaaagccccacaacagaatagtaaacccaagagatgaagagattcttccccttacct 20145859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22186891 - 22186980
Alignment:
Q  1 ccatcataacaacactcttactataacccc-tttacagccccacaacagaatattataccctagagatgaagagattctccctcttacct 89  Q
    |||||||||| |||||| |||  ||||||| |||| ||||||||||||||||| || |||| ||||||||||||||||| || |||||||    
T  22186891 ccatcataaccacactcatacattaaccccctttaaagccccacaacagaatagtaaacccaagagatgaagagattcttccccttacct 22186980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 7680663 - 7680599
Alignment:
Q  32 ttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaatcc 96  Q
    ||||||||||||||   |||| || |||||||| |||||||||||||||| ||||||||||||||    
T  7680663 ttacagccccacaatgaaataataaaccctagacatgaagagattctcccccttacctcgaatcc 7680599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16533 - 16624
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||  | ||||||| ||||||||||||||||||||||||| ||||||||||    
T  16533 ccatcataacaacactcatactctaacccctttacaaccctacagaaaaatattaaaccctagagatgaagagattctcccccttacctcga 16624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31185 - 31276
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    ||||||||||||||||| ||||  |||||||||||| ||| | |||| |||| || ||||||||||||||||||||||||| ||||||||||    
T  31185 ccatcataacaacactcatactccaacccctttacaacccaaaaacaaaataataaaccctagagatgaagagattctcccccttacctcga 31276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 26156 - 26065
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    ||||||||||||||||| ||||  |||||||||||| ||| | | || |||| || ||||||||||||||||||||||||| ||||||||||    
T  26156 ccatcataacaacactcatactccaacccctttacaaccctatagcaaaataataaaccctagagatgaagagattctcccccttacctcga 26065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 51624948 - 51624858
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    ||||||||||||||||| |||| ||||||||||||| ||| ||| || ||||||| ||| ||||||||||||||||| ||| ||||||||||    
T  51624948 ccatcataacaacactcatactctaacccctttacaaccctacagcaaaatattaaaccttagagatgaagagattc-cccccttacctcga 51624858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16751 - 16665
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttac 87  Q
    ||||||||||||||||| ||||  |||||||||||| ||| ||| || |||| || ||||||||||||||||||||||||| |||||    
T  16751 ccatcataacaacactcatactccaacccctttacaaccctacagcaaaataataaaccctagagatgaagagattctcccccttac 16665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25809 - 25723
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttac 87  Q
    ||||||||||||||||| ||||  |||||||||||| ||| ||| || |||| || ||||||||||||||||||||||||| |||||    
T  25809 ccatcataacaacactcatactccaacccctttacaaccctacagcaaaataataaaccctagagatgaagagattctcccccttac 25723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 71282 - 71376
Alignment:
Q  1 ccatcataacaacactcttactataacc-cctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaat 94  Q
    |||||||||| |||| | |||  ||||| |||||| ||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||    
T  71282 ccatcataaccacacgcatacattaacctcctttaaagccccacaacagaatagtaaacccaagagatgaagagattctcccccttacctcgaat 71376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 132719 - 132810
Alignment:
Q  1 ccatcataacaacactcttactataacccctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcga 92  Q
    |||||||||||| |||| || |  |||||||||||| ||| |||||| |||| || |||||||| |||||||||||||||| ||||||||||    
T  132719 ccatcataacaaaactcatattccaacccctttacaaccctacaacaaaataataaaccctagaaatgaagagattctcccccttacctcga 132810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 17883280 - 17883425
Alignment:
Q  58 ccctagagatgaagagattctccctcttacctcgaatccatagaaaccttcgatttgcctcgatgttgctgcactagggttccgcttctctccctatggt 157  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||| |||| | |   ||||||||||||||| |||||||| | || |    
T  17883280 ccctatagatgaatagattctccc-cttacctcgaatccatagaaaccttcggtttggctcggt-tcaatgcactagggttccgtttctctccttctgct 17883377  T
Q  158 tttcttcttccttttttctaattagcaaaactgatttctaatccctaa 205  Q
    | ||||||  ||||   |  || | |||||||||||||||||||||||    
T  17883378 tctcttctctctttccccggatcaacaaaactgatttctaatccctaa 17883425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 26859217 - 26859181
Alignment:
Q  58 ccctagagatgaagagattctccctcttacctcgaat 94  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26859217 ccctagagatgaagagattctcccccttacctcgaat 26859181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 4191 - 4127
Alignment:
Q  30 ctttacagccccacaacagaatattataccctagagatgaagagattctccctcttacctcgaat 94  Q
    |||||||||||||||| | |||| || ||||||  ||||||||||||||| | ||||||||||||    
T  4191 ctttacagccccacaataaaataataaaccctaaggatgaagagattctctcccttacctcgaat 4127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University