View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_high_1 (Length: 1009)

Name: NF1619_high_1
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_high_1
NF1619_high_1
[»] chr6 (7 HSPs)
chr6 (318-789)||(27176071-27176546)
chr6 (20-221)||(27175770-27175971)
chr6 (860-992)||(27176617-27176746)
chr6 (204-233)||(736861-736890)
chr6 (203-240)||(27334858-27334895)
chr6 (203-240)||(27395598-27395635)
chr6 (203-240)||(32644623-32644660)
[»] chr8 (9 HSPs)
chr8 (321-386)||(11789888-11789953)
chr8 (203-240)||(14531621-14531658)
chr8 (203-233)||(29913564-29913594)
chr8 (679-708)||(5270666-5270695)
chr8 (203-240)||(9985712-9985749)
chr8 (207-240)||(33511747-33511780)
chr8 (203-240)||(34037520-34037557)
chr8 (203-240)||(36497661-36497698)
chr8 (203-240)||(40380281-40380318)
[»] chr3 (11 HSPs)
chr3 (192-240)||(19418191-19418239)
chr3 (325-386)||(22153985-22154046)
chr3 (314-386)||(35425561-35425633)
chr3 (203-233)||(21239119-21239149)
chr3 (203-233)||(37134647-37134677)
chr3 (203-240)||(1295332-1295369)
chr3 (203-240)||(7867745-7867782)
chr3 (203-240)||(36799398-36799435)
chr3 (203-240)||(45528976-45529013)
chr3 (203-240)||(50559246-50559283)
chr3 (203-240)||(50652388-50652425)
[»] chr2 (9 HSPs)
chr2 (616-650)||(5259342-5259376)
chr2 (203-240)||(3091741-3091778)
chr2 (203-240)||(3299139-3299176)
chr2 (203-240)||(14255302-14255339)
chr2 (203-240)||(14891112-14891149)
chr2 (203-240)||(15141473-15141510)
chr2 (203-240)||(22303203-22303240)
chr2 (203-240)||(25086335-25086372)
chr2 (207-240)||(43621982-43622015)
[»] chr7 (8 HSPs)
chr7 (203-240)||(26153646-26153683)
chr7 (318-386)||(49089053-49089121)
chr7 (203-240)||(2323304-2323341)
chr7 (203-240)||(5068657-5068694)
chr7 (204-233)||(10014996-10015025)
chr7 (203-240)||(22692084-22692121)
chr7 (203-240)||(31785494-31785531)
chr7 (203-240)||(40693562-40693599)
[»] chr4 (14 HSPs)
chr4 (200-240)||(52430874-52430914)
chr4 (203-245)||(35017153-35017195)
chr4 (203-240)||(3475869-3475906)
chr4 (203-240)||(11012141-11012178)
chr4 (203-240)||(15515795-15515832)
chr4 (203-240)||(24088598-24088635)
chr4 (204-233)||(32464645-32464674)
chr4 (203-240)||(33093138-33093175)
chr4 (203-240)||(36444429-36444466)
chr4 (203-240)||(42853939-42853976)
chr4 (203-240)||(44272844-44272881)
chr4 (203-240)||(44626605-44626642)
chr4 (203-240)||(45764422-45764459)
chr4 (203-240)||(47014939-47014976)
[»] chr1 (14 HSPs)
chr1 (200-240)||(29293956-29293996)
chr1 (318-386)||(30530288-30530356)
chr1 (203-245)||(18610773-18610815)
chr1 (203-240)||(11947795-11947832)
chr1 (200-229)||(23472105-23472134)
chr1 (203-240)||(26585207-26585244)
chr1 (203-240)||(29706737-29706774)
chr1 (203-240)||(31184281-31184318)
chr1 (318-387)||(34002208-34002277)
chr1 (199-240)||(34395953-34395994)
chr1 (203-240)||(40139126-40139163)
chr1 (192-241)||(42256449-42256498)
chr1 (203-240)||(43612103-43612140)
chr1 (203-240)||(52261339-52261376)
[»] scaffold0154 (2 HSPs)
scaffold0154 (202-240)||(19725-19763)
scaffold0154 (203-240)||(4315-4352)
[»] scaffold0662 (1 HSPs)
scaffold0662 (203-240)||(1078-1115)
[»] scaffold0002 (1 HSPs)
scaffold0002 (203-240)||(440718-440755)
[»] chr5 (5 HSPs)
chr5 (207-240)||(3154677-3154710)
chr5 (203-240)||(7144577-7144614)
chr5 (203-240)||(19844343-19844380)
chr5 (203-240)||(29803225-29803262)
chr5 (203-240)||(34428160-34428197)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 318 - 789
Target Start/End: Original strand, 27176071 - 27176546
Alignment:
Q  318 caataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactcataagaaagacaaaaatataaattttttatt 417  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  27176071 caataagaagaaagcaaatgaaagttgtcattaaagatgtcacaaattattttacaaatatcactactcacaagaaagacaaaaatttaaattttttatt 27176170  T
Q  418 gaatttgaaaacacaattttctaacctctataaagttgaataaatatttatccgcaaaggtgtaacacaaccgataatattaacattattagatcgaata 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  27176171 gaatttgaaaaaacaattttctaacctctataaagttgaataaatatttatccgcaaaggtgttacacaaccgacaatatcaacattattagatcgaata 27176270  T
Q  518 tcttctgtggtgtttttcggaagcttccacnnnnnnnngtt----gtcttaactctccggttttcaaggggaagatgccctggtaatttggagttccatc 613  Q
    |||| |||||||||||||||||||||||||         ||    || |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27176271 tcttttgtggtgtttttcggaagcttccacttttttttttttttggtgttaactctccggttttcaagggaaagatgccctggtaatttggagttccatc 27176370  T
Q  614 aatagctaagtaaaatctgacaaaaaattgtttcatctcagagtcaaactcaagtttttctcaactcatttaccacttgaactcaattgtttggtcccca 713  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27176371 aatagctaagtaaaatctgacaaaaaattgtttcatcttagagtcaaactcaagtttttctcaactcatttaccacttgaactcaattgtttggtcccca 27176470  T
Q  714 gatcttcaactttatgtattgagtgttgtatcggtgattcggactaaaaaataagttgaataagtattttccaaca 789  Q
     |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27176471 aatcttcaactttttgtattgagtgttgtattggtgattcggactaaaaaataagttgaataagtattttccaaca 27176546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 27175770 - 27175971
Alignment:
Q  20 agcaaactatatacacacaatgtggatcaatata--ttgtg-cgctcacttcttccgttcaattttactattcacaaaatgttgagtttccatattcttt 116  Q
    |||||||||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27175770 agcaaactatatacacacaatgtggatcaatacacattgtaacactcacttcttccgttcaattttactattcacaaaatgttgagtttccatattcttt 27175869  T
Q  117 attctctaaattcatattgtaaaacgagtatgtttgatttcaagcaaacaatcctgacatgtcatataag-gtacttgataagaaaggagaaatgatatt 215  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  27175870 attctctaaattcatattgtaaaac----atgtttgatttcaagcaaacaatcctgacatgtgatgtaagagtacttgataagaaaggagaaatgatatt 27175965  T
Q  216 tgtaca 221  Q
    ||||||    
T  27175966 tgtaca 27175971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 860 - 992
Target Start/End: Original strand, 27176617 - 27176746
Alignment:
Q  860 agtttaatttatatatattgtaaccgtacctacaaaagttttattcatgtatctactaatgtgtttcatttatcaagttaaaaatacttggtttctcatg 959  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27176617 agtttaatttatat---ttgtaaccgtacctacaaaagttttattcatgtatctactaatgtgtttcatttatcaaattaaaaatacttggtttctcatg 27176713  T
Q  960 cttcattaatttatatgccaacacatattagat 992  Q
    |||||||||||||||||||||||||||||||||    
T  27176714 cttcattaatttatatgccaacacatattagat 27176746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 736890 - 736861
Alignment:
Q  204 agaaatgatatttgtacaactattttatga 233  Q
    ||||||||||||||||||||||||||||||    
T  736890 agaaatgatatttgtacaactattttatga 736861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 27334858 - 27334895
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  27334858 gagaaatgatatttgtacaactattttgtgacaacttt 27334895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 27395598 - 27395635
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  27395598 gagaaatgatatttgtacaactattttgtgacaacttt 27395635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 32644623 - 32644660
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  32644623 gagaaatgatatttgtacaactattttttgacaacttt 32644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 11789888 - 11789953
Alignment:
Q  321 taagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 386  Q
    |||||||||  ||||||||||||||||| |||||| |||||||| ||| ||||||||| |||||||    
T  11789888 taagaagagaacaaatgaaagttgtcatcaaagatatcacaaatagttgtacaaatatcactactc 11789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 14531621 - 14531658
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14531621 gagaaatgatatttgtacaactattttatgataacttt 14531658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 233
Target Start/End: Original strand, 29913564 - 29913594
Alignment:
Q  203 gagaaatgatatttgtacaactattttatga 233  Q
    |||||||||||||||||||||||||||||||    
T  29913564 gagaaatgatatttgtacaactattttatga 29913594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 679 - 708
Target Start/End: Complemental strand, 5270695 - 5270666
Alignment:
Q  679 tcatttaccacttgaactcaattgtttggt 708  Q
    ||||||||||||||||||||||||||||||    
T  5270695 tcatttaccacttgaactcaattgtttggt 5270666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 9985749 - 9985712
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  9985749 gagaaatgatatttgtacatctattttatgacaacttt 9985712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 33511780 - 33511747
Alignment:
Q  207 aatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||| ||||||||||    
T  33511780 aatgatatttgtacaactattttgtgaaaacttt 33511747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 34037557 - 34037520
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  34037557 gagagatgatatttgtacaactattttatgataacttt 34037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 36497661 - 36497698
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  36497661 gagaaatgatatttgtacaactattttgtgacaacttt 36497698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 40380281 - 40380318
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  40380281 gagaaatgatatttgtacatctattttatgacaacttt 40380318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 19418239 - 19418191
Alignment:
Q  192 tgataagaaaggagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    |||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  19418239 tgataagaaatgagaaatgatatttgtacaaccattttatgacaacttt 19418191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 22153985 - 22154046
Alignment:
Q  325 aagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 386  Q
    ||||| ||||||||||||||||||||||| |||  ||||| ||| ||||||||| |||||||    
T  22153985 aagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtacaaatatcactactc 22154046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 35425633 - 35425561
Alignment:
Q  314 ggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 386  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||  |||||  || |||| |||| |||||||    
T  35425633 ggatcaatgagaagagagcaaatgaaagttgtcatcaaagatgtaccaaatgattatacatatatcactactc 35425561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 233
Target Start/End: Complemental strand, 21239149 - 21239119
Alignment:
Q  203 gagaaatgatatttgtacaactattttatga 233  Q
    |||||||||||||||||||||||||||||||    
T  21239149 gagaaatgatatttgtacaactattttatga 21239119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 233
Target Start/End: Complemental strand, 37134677 - 37134647
Alignment:
Q  203 gagaaatgatatttgtacaactattttatga 233  Q
    |||||||||||||||||||||||||||||||    
T  37134677 gagaaatgatatttgtacaactattttatga 37134647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 1295332 - 1295369
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  1295332 gagaaatgatatttgtacaactattttgtgataacttt 1295369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 7867782 - 7867745
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  7867782 gagaaatgatatttgtacaactattttgtgacaacttt 7867745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 36799398 - 36799435
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  36799398 gagaaatgatatttgtacaactattttttgataacttt 36799435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 45529013 - 45528976
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  45529013 gagaaatgatatttgtacaactattttttgacaacttt 45528976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 50559283 - 50559246
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  50559283 gagaaatgatatttgtacaactattttttgacaacttt 50559246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 50652388 - 50652425
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  50652388 gagaaatgatatttgtacaaccattttatgacaacttt 50652425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 616 - 650
Target Start/End: Original strand, 5259342 - 5259376
Alignment:
Q  616 tagctaagtaaaatctgacaaaaaattgtttcatc 650  Q
    |||||||||||||||||||||||||||||||||||    
T  5259342 tagctaagtaaaatctgacaaaaaattgtttcatc 5259376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 3091741 - 3091778
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  3091741 gagaaatgatatttgtacaactattttgtgataacttt 3091778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 3299176 - 3299139
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  3299176 gagaaatgatatttgtacaaccattttatgacaacttt 3299139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 14255302 - 14255339
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  14255302 gagaaataatatttgtacaactattttatgacaacttt 14255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 14891149 - 14891112
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  14891149 gagaaatgatatttgtacaactattttgtgataacttt 14891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 15141473 - 15141510
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  15141473 gagaaatgatatttgtacatctattttatgacaacttt 15141510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22303203 - 22303240
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  22303203 gagaaatgatatttgtacaactattttttgacaacttt 22303240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 25086335 - 25086372
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  25086335 gagaaatgatatttgtacaacaattttatgacaacttt 25086372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 43622015 - 43621982
Alignment:
Q  207 aatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||||||    
T  43622015 aatgatatttgtacaactattttatgacaacttt 43621982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 26153646 - 26153683
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26153646 gagaaatgatatttgtacaactattttatgacaacttt 26153683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 49089121 - 49089053
Alignment:
Q  318 caataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 386  Q
    |||| ||||||| | |||||||||||||||| |||| ||||| |||||||| |||| |||| |||||||    
T  49089121 caatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcactactc 49089053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 2323304 - 2323341
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  2323304 gagaaatgatatttgtacaacaattttatgacaacttt 2323341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 5068694 - 5068657
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  5068694 gagaaatgatatttgtacaaccattttatgataacttt 5068657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 10015025 - 10014996
Alignment:
Q  204 agaaatgatatttgtacaactattttatga 233  Q
    ||||||||||||||||||||||||||||||    
T  10015025 agaaatgatatttgtacaactattttatga 10014996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 22692084 - 22692121
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  22692084 gagaaatgatatttgtacaaccattttatgacaacttt 22692121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 31785531 - 31785494
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  31785531 gagaaatgatatttgtacaaccactttatgaaaacttt 31785494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 40693599 - 40693562
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  40693599 gagaaatgatatttgtacaactattttttgacaacttt 40693562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 52430874 - 52430914
Alignment:
Q  200 aaggagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  52430874 aaggaaaaatgatatttgtacaactattttatgacaacttt 52430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 35017153 - 35017195
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaactttgttac 245  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||    
T  35017153 gagaaatgatatttgtacaactattttgtgacaacttttttac 35017195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 3475869 - 3475906
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  3475869 gagaaatgatatttgtacaaccattttatgacaacttt 3475906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 11012141 - 11012178
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  11012141 gagaaatgatatttgtacaaccattttatgacaacttt 11012178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 15515795 - 15515832
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  15515795 gagaaatgatattggtacaactattttatgacaacttt 15515832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 24088635 - 24088598
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  24088635 gagaaatgatatttgtacaaccattttatgacaacttt 24088598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 32464674 - 32464645
Alignment:
Q  204 agaaatgatatttgtacaactattttatga 233  Q
    ||||||||||||||||||||||||||||||    
T  32464674 agaaatgatatttgtacaactattttatga 32464645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 33093175 - 33093138
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  33093175 gagaaatgatatttgtacaactattttgtgacaacttt 33093138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 36444466 - 36444429
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  36444466 gagaaatgatatttgtacaaccattttatgataacttt 36444429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 42853939 - 42853976
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  42853939 gagaaatgatatttgtacaactattttttgacaacttt 42853976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 44272881 - 44272844
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  44272881 gagaaatgatatttgtacaactattttttgacaacttt 44272844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 44626605 - 44626642
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  44626605 gagaaatgatatttgaacaactattttatgataacttt 44626642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 45764459 - 45764422
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  45764459 gagaaatgatatttatacaactattttatgacaacttt 45764422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 47014939 - 47014976
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  47014939 gagaaatgatatttgtacaactattttgtgacaacttt 47014976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 29293956 - 29293996
Alignment:
Q  200 aaggagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  29293956 aaggagaaatgatatttgtacaactactttatgacaacttt 29293996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 30530356 - 30530288
Alignment:
Q  318 caataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 386  Q
    |||||||||||| | |||||||||||||||| |||| |||| ||||| ||| |||| |||| |||||||    
T  30530356 caataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactc 30530288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 18610773 - 18610815
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaactttgttac 245  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||    
T  18610773 gagaaatgatatttgtacaactattttgtgacaacttttttac 18610815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 11947795 - 11947832
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  11947795 gagaaatgatatttgtacaaccattttatgacaacttt 11947832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 23472105 - 23472134
Alignment:
Q  200 aaggagaaatgatatttgtacaactatttt 229  Q
    ||||||||||||||||||||||||||||||    
T  23472105 aaggagaaatgatatttgtacaactatttt 23472134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 26585244 - 26585207
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  26585244 gagaaatgatatttgtacaactattttgtgataacttt 26585207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 29706774 - 29706737
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  29706774 gagaaatgatatttgtacaaccattttatgataacttt 29706737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 31184281 - 31184318
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  31184281 gagaaatgatatttgtacaaccattttatgacaacttt 31184318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 34002277 - 34002208
Alignment:
Q  318 caataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactca 387  Q
    |||||||||||| | ||||||||||||| || |||| |||| ||||| ||| |||| |||| ||||||||    
T  34002277 caataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactca 34002208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 34395994 - 34395953
Alignment:
Q  199 aaaggagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    |||||| |||||||||||||||| ||||||||||| ||||||    
T  34395994 aaaggataaatgatatttgtacatctattttatgacaacttt 34395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 40139126 - 40139163
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  40139126 gagaaatgatatttgtacaaccattttatgacaacttt 40139163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 42256449 - 42256498
Alignment:
Q  192 tgataagaaaggagaaatgatatttgtacaactattttatgaaaactttg 241  Q
    |||||| ||| ||||||||||||||||||||| ||||| ||| |||||||    
T  42256449 tgataataaaagagaaatgatatttgtacaaccattttgtgacaactttg 42256498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 43612140 - 43612103
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  43612140 gagaaatgatatttgtacaaccattttatgacaacttt 43612103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 52261339 - 52261376
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  52261339 gagaaatgatatttgaacaactattttatgataacttt 52261376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 19763 - 19725
Alignment:
Q  202 ggagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  19763 ggagaaatgatatttgtacaactattttgtgacaacttt 19725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 4315 - 4352
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  4315 gagaaatgatatttgtacaaccattttatgataacttt 4352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 1078 - 1115
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  1078 gagaaatgatatttgtacaactattttgtgacaacttt 1115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 440718 - 440755
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  440718 gagaaatgatatttgtacaactactttatgacaacttt 440755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 3154710 - 3154677
Alignment:
Q  207 aatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||||||    
T  3154710 aatgatatttgtacaactattttatgataacttt 3154677  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 7144577 - 7144614
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  7144577 gagaaatgatatttgtacaaccattttatgataacttt 7144614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 19844380 - 19844343
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  19844380 gagaaatgatatttgtacaactattttttgataacttt 19844343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 29803225 - 29803262
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  29803225 gagaaatgatatttgtacaactattttttgacaacttt 29803262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 34428160 - 34428197
Alignment:
Q  203 gagaaatgatatttgtacaactattttatgaaaacttt 240  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  34428160 gagaaatgatatttgtacaactattttttgacaacttt 34428197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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