View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_13 (Length: 439)
Name: NF1619_high_13
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 178 - 420
Target Start/End: Original strand, 4376193 - 4376434
Alignment:
| Q |
178 |
tagtatcttcatcaaaaaggtacctgcaccaaaagaataaaaggttgcaccttcccgccatcaatcaacatcaacaaaatgcataatgtagctaatttca |
277 |
Q |
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| T |
4376193 |
tagtatcttcatcaaaaaggtacctgcaccaaaagaataaaaggtagcaccttcccgccatcaatcaacatcaacaaaatgcataatgtggctaatttca |
4376292 |
T |
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| Q |
278 |
aagttgacctacaccactaaatctctaaatgattaaatattatagctttatgtagtttcatcttaaacaatttacgatttgaacaagtttttaatgtgtt |
377 |
Q |
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| T |
4376293 |
a-gttgacctacaccactaaatctctaaatgattaaatattatagctttatgtagtttcatcttaaacaatttacgattcgaacaagtttttaatgtgtt |
4376391 |
T |
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| Q |
378 |
attccgttacctacccaaagaatgagacctagaaagacacgta |
420 |
Q |
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| T |
4376392 |
attccgttacctacccaaagaatgagacctagaaagacacgta |
4376434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4376049 - 4376155
Alignment:
| Q |
1 |
acgtgtttgatcttttgagattgtttgcactcttggtaaaaaggaagaaaatatgaatactgatactctgaaaggaggagcagcatcataatacactcct |
100 |
Q |
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| T |
4376049 |
acgtgtttgatcttttgagattgtttgcactcttggtaaaaaggaagaaaatatgaatactgatactctgaaaggagacgcag---cataatacactcct |
4376145 |
T |
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| Q |
101 |
ttgttcataa |
110 |
Q |
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| T |
4376146 |
ttgttcataa |
4376155 |
T |
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