View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_17 (Length: 371)
Name: NF1619_high_17
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 27560081 - 27559747
Alignment:
| Q |
21 |
tgttttgcatgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgattttagaggccttcaagattgtctataatttcaaacaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560081 |
tgttttgcatgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgattttagaggccttcaagattgtctataatttcaaacaa |
27559982 |
T |
|
| Q |
121 |
ctcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaatttgttctgggaatgtatggcctggaggatcatcagaaaaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27559981 |
ctcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaatttgttctggaaatgtatggcctggaggatcatcagaaaaa |
27559882 |
T |
|
| Q |
221 |
ggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttctaagtagtgaaaagaagcacctgtctg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27559881 |
ggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttctaagtaatgaaaagaagcacctgtctg |
27559782 |
T |
|
| Q |
321 |
tggctgttgtgcttgccaaattttatgttggatgt |
355 |
Q |
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| T |
27559781 |
tggctgttgtgcttgccaaattttatgttggatgt |
27559747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 36667645 - 36667371
Alignment:
| Q |
19 |
tttgttttgcatgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgattttagaggccttcaagattgtctataatttcaaac |
118 |
Q |
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| T |
36667645 |
tttgttttgcatgtgtatctgcaactatactttccatgattctcaaacattatctgcattctgattttagaggcctt-aagattgtctctaatttcaaac |
36667547 |
T |
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| Q |
119 |
aactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaatttgttctgggaatgtatggcctggaggatcatcagaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||| ||||||||| ||||| || |
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| T |
36667546 |
aactcattaaggtgttttgttacagattgaaaagttacaggaggagaaccaggagttagaatttgttttggatatgtatggtctggaggattatcag-aa |
36667448 |
T |
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| Q |
219 |
aaggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttcta |
295 |
Q |
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| T |
36667447 |
aaggtatgctgatctgaagttgttcagtagtggcagagtttagtctagttaatgtaattattggactcgttattcta |
36667371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 29409512 - 29409207
Alignment:
| Q |
1 |
gcaatgtttttcttttcctttgttttg-------catgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgattttagaggcc |
93 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||| |||||||||||||| |||||| ||||||||| |||| |
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| T |
29409512 |
gcaatgtttttcttttcctttgttttgtgttttgcttgtgtatctgcacctatattttccatgattctcaaacattatatgcattatgattttagtggcc |
29409413 |
T |
|
| Q |
94 |
ttcaagattgtctataa-----tttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcaggagttggaatttgttctg |
188 |
Q |
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||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
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| T |
29409412 |
ttcaagattgtctataactaattttcaaccaactcattaagatgttttgttacagattgaaaagttacaggaggagaatcgggagttagaatttgttttg |
29409313 |
T |
|
| Q |
189 |
ggaatgtatggcctggaggatcatcagaaaaaggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgt |
288 |
Q |
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| T |
29409312 |
gatatgtatggcctagaagattatcag-aaaaggtatgctgatctggggttgttcagtagtggcagagcttagtctagttaatgtaattttttgacttgt |
29409214 |
T |
|
| Q |
289 |
tgttcta |
295 |
Q |
| |
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| ||||| |
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| T |
29409213 |
tattcta |
29409207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 29409160 - 29409099
Alignment:
| Q |
294 |
taagtagtgaaaagaagcacctgtctgtggctgttgtgcttgccaaattttatgttggatgt |
355 |
Q |
| |
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|||||| |||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| |
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| T |
29409160 |
taagtattgaaaagaagcacccgcctgtggctgttgtgcttaccaaattttatgttagatgt |
29409099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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