View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_18 (Length: 360)
Name: NF1619_high_18
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_18 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 32665426 - 32665784
Alignment:
| Q |
1 |
atcaataagaaaaatgaactgcttggtatagatattatcttgattgatgaagaggtatcaatgcgtgtgttatattcatacaaaatctaatactcaataa |
100 |
Q |
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||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32665426 |
atcaataagaaaa-tgaactgcttagtatagatatggtcttgattgatgaagaggtatcaatgcgtgtgttatattcatacaaaatctaatactgaataa |
32665524 |
T |
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| Q |
101 |
aatggtccatgctctcaatttcgtagttttattcttttgtgnnnnnnnncatgtagcagggtttaacaaatcatgtctattctcaataagtacccactat |
200 |
Q |
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| T |
32665525 |
aatggtccatgctctcaatttcgtagttttattcttttgtgtttttttctatgtagcagggtttaacaaatcatgtctattctcaataagtacccactat |
32665624 |
T |
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| Q |
201 |
cttatcttttcaaatataaatttgttctattttcaatatccatttttcttacatgtttctgatcaaacaatgttcatttatgtttgtgactatgaaaata |
300 |
Q |
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| T |
32665625 |
cttatcttttcaaatataaatttgttctattttaaatatccatttttcttacatgtttctgatcaaacaatgttcatttatgtttgtgactatgaaaaaa |
32665724 |
T |
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| Q |
301 |
tgattcactaataaaacaaaatttaaaaaatggcttaaaactaatttcatcatccatatt |
360 |
Q |
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| T |
32665725 |
tgattcactaataaaacaaaatttaaaaaatggcttaaaactaatttcatcatccatatt |
32665784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 9081709 - 9081348
Alignment:
| Q |
1 |
atcaataagaaaaatgaactgcttggtatagatattatcttgattgatgaagaggtatcaatgcgtgtgttatattcatacaaaatctaatactcaataa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
9081709 |
atcaataagaaaaatgaactgcttagtatagatatggtcttgattgatgaagaggtatcaatgtgtgtgttatattcatacaaaatctaataccgaataa |
9081610 |
T |
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| Q |
101 |
aatggtccatgctctcaatttcgtagttttattcttttgtgnnnnnnnncatgtagcagggtttaacaaatcatgtctattctcaataagtacccactat |
200 |
Q |
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| T |
9081609 |
aatggcccatgctctcaatttcgtagttttattcttttgtgttttttct-atgtagcagggtttaacaaatcatgtctattctcaataagtacccactat |
9081511 |
T |
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| Q |
201 |
cttatcttttcaaatataaatttgttctattttcaatatccatttttcttacatg-tttctgatc-aaacaatgttcatttatgtttgtgactatgaaaa |
298 |
Q |
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| T |
9081510 |
cttatcttttcaaatataaatttgttttattttcaatatccatttttcttacatgttttctgatcaaaacattgttcatttatgtttgtgactatgaaaa |
9081411 |
T |
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| Q |
299 |
tatgattcactaat-aaaacaaaatttaaaaaatggcttaaaactaatttcatcatccatatt |
360 |
Q |
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| T |
9081410 |
aataattcacttataaaaacaaaatttaaaaaatggcttaaaactaatttcatcatccatatt |
9081348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 6412979 - 6412640
Alignment:
| Q |
21 |
gcttggtatagatattatcttgattgatgaagaggtatcaatgcgtgtgttatattcatacaaaatctaatactcaataaaatggtccatgctctcaatt |
120 |
Q |
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|||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6412979 |
gcttagtatagatatggtcttgattgatgaagaggcatcaatgcgtgtgttatattcatacaaaatctaatactgaataaaatggtccatgctctcaatt |
6412880 |
T |
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| Q |
121 |
tcgtagttttattcttttgtgnnnnnnnncatgtagcagggtttaacaaatcatgtctattctcaataagtacccactatcttatcttttcaaatataaa |
220 |
Q |
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| T |
6412879 |
tcatagttttattcttttgtgttttttct-atgtagcagggtttaacaaatcatgtctattctcaataagtatccactatcttatctttttaaatataaa |
6412781 |
T |
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| Q |
221 |
tttgttctattttcaatatccatttttcttacatgtttctgatcaaacaatgttcatttatgtttgtgactatg-aaaatatgattcactaataaaacaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
6412780 |
tttgttctattttcaatatccatttttcttacatgtttctgatcaaacaatgttcatttatgtttgtgactatgaaaaaaatgattcactaataaaacaa |
6412681 |
T |
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| Q |
320 |
aatttaaaaaatggcttaaaactaatttcatcatccatatt |
360 |
Q |
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| T |
6412680 |
aatttaaaaaatggcttaaaactaatttcatcatccatatt |
6412640 |
T |
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