View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1619_high_22 (Length: 338)
Name: NF1619_high_22
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 1416807 - 1417130
Alignment:
| Q |
1 |
gttacttagacttaagggaagggaactaataattaagggaaagaaaaacattggcaaccatt---tacgaagnnnnnnnnnngatcatcacataacatgt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |
|
|
| T |
1416807 |
gttacttagacttaagggaagggaactaataattaagggaaagaaaaacattgtcaaccattatttacgaa--aaaaaaaaagatcatcacataacatgt |
1416904 |
T |
|
| Q |
98 |
gtgttgatattgttactttcatggaagaaagtttaatagttttacttggaagtacttaacgaaccaatacaaagtggttgaagtgctatatgctttacaa |
197 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1416905 |
gtgttgatattgttacgttcattgaagaaagtttaatagttttacttggaagtacttaacgaaccaatacaaagtggttgaagtgctatatgctttacaa |
1417004 |
T |
|
| Q |
198 |
ttattaaaccaaagaaattgttggtaaatttgcttcagttgtagaccaccattgcaagattgtacttaaagatatgtacttagaagtggaattaggagtt |
297 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1417005 |
ttattaaaccaaagaaattgttcgtaaatttgcttcagttgtagaccaccattgcaagattgtacttaaagatatgtacttagaagtggaattaggagtt |
1417104 |
T |
|
| Q |
298 |
tactcaaatcatcattacatgaacat |
323 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
1417105 |
tactcaaatgatcattacatgaacat |
1417130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University