View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_high_24 (Length: 307)

Name: NF1619_high_24
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_high_24
NF1619_high_24
[»] chr5 (3 HSPs)
chr5 (5-91)||(20181710-20181796)
chr5 (236-307)||(24012449-24012520)
chr5 (236-307)||(41699631-41699702)
[»] chr7 (3 HSPs)
chr7 (203-307)||(17353968-17354072)
chr7 (192-303)||(32795528-32795639)
chr7 (244-306)||(22367617-22367679)
[»] chr3 (2 HSPs)
chr3 (239-307)||(13798179-13798247)
chr3 (247-307)||(51241812-51241872)
[»] chr4 (5 HSPs)
chr4 (236-307)||(18823251-18823322)
chr4 (244-307)||(13250217-13250280)
chr4 (236-306)||(29290781-29290851)
chr4 (192-307)||(33034035-33034149)
chr4 (236-307)||(33660231-33660301)
[»] chr6 (2 HSPs)
chr6 (246-307)||(28538822-28538883)
chr6 (236-302)||(28841291-28841357)
[»] chr1 (2 HSPs)
chr1 (192-307)||(12142180-12142295)
chr1 (236-302)||(2626709-2626775)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 20181796 - 20181710
Alignment:
Q  5 ttataataagagacaagcttttgtgtcaatctaaacttaagctctttatgttcttttgaatgctccaacttctacctcacttgagca 91  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20181796 ttatgataagagacaaacttttgtgtcaatctaaacttaagctcttgatgttcttttgaatgctccaacttctacctcacttgagca 20181710  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 24012520 - 24012449
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    ||||||| || ||||||||| |||||||||||||  |||||||||||| |||||||||||||||||| ||||    
T  24012520 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaacctctaaatt 24012449  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 41699631 - 41699702
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    ||||||| || ||||||||| |||||||||||||  |||||||||||| ||||||||||||| |||| ||||    
T  41699631 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaatctctaaatt 41699702  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 17354072 - 17353968
Alignment:
Q  203 ttcctttttaagcgtcacatttgctnnnnnnnnttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctct 302  Q
    |||||||||||| ||||||||||||        ||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  17354072 ttcctttttaagtgtcacatttgctaaaaaaaattgttcctatttaagtgtcacatttagagtttaagatggtaatatgtcaattatacccttaacctct 17353973  T
Q  303 caatt 307  Q
    |||||    
T  17353972 caatt 17353968  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 32795528 - 32795639
Alignment:
Q  192 tactccctctgttcctttttaagcgtcacatttgctnnnnnnnnttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatac 291  Q
    ||||||||| ||| || |||||| ||||||||||||        ||||||| |||||||| ||| || | ||||||||||||||||||| ||||||||||    
T  32795528 tactccctcagtttctatttaagtgtcacatttgctaaaaaaaattgttcctatttaagtatcacttatggagtttaagattgtaatatatcaattatac 32795627  T
Q  292 ccttaacctctc 303  Q
    | ||||||||||    
T  32795628 cgttaacctctc 32795639  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 22367679 - 22367617
Alignment:
Q  244 atttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaat 306  Q
    |||||||||||  ||||| |||||||| ||||||||| ||||||||||||| |||||||||||    
T  22367679 atttaagtgtcgcttttaaagtttaaggttgtaatatatcaattataccctcaacctctcaat 22367617  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 13798179 - 13798247
Alignment:
Q  239 ttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  13798179 ttcctatttaagtgtcatttttagagtttaagattataatatgtcaattatagccttaacctctcaatt 13798247  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 51241812 - 51241872
Alignment:
Q  247 taagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    |||||||||||||||||||||||  |||||||||||| |||||| ||||||||||| ||||    
T  51241812 taagtgtcatttttagagtttaaagttgtaatatgtctattatatccttaacctctaaatt 51241872  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 18823251 - 18823322
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  18823251 ttgttcctatttaagtgtcacttttagaatttaagattgtaatatgtcaattatacctttaacctctcaatt 18823322  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 13250280 - 13250217
Alignment:
Q  244 atttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  13250280 atttaagtgtcacttttagagtttaagactgtaatatatcaattatacccttaacctctcaatt 13250217  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 29290781 - 29290851
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaat 306  Q
    |||||||  |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  29290781 ttgttcctgtttaagtgccatttttagagtttaaaattgtaatatatcaattatacccttaacctctcaat 29290851  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 33034149 - 33034035
Alignment:
Q  192 tactccctctgttcctttttaagcgtcacatttgctnnnnnnnnttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatac 291  Q
    |||||||||||||||||||| |||||||||||| ||        || |||  |||||||||| | ||||||| |||||||||||||||||||||||||||    
T  33034149 tactccctctgttccttttttagcgtcacatttactaaaaaaa-ttattcttatttaagtgttacttttagaatttaagattgtaatatgtcaattatac 33034051  T
Q  292 ccttaacctctcaatt 307  Q
     |||| ||||||||||    
T  33034050 tcttagcctctcaatt 33034035  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 33660231 - 33660301
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||||||||| |||||||||||    
T  33660231 ttgttcctatttaagtgtcacatttagactttaagatggtaatatgtcaattataccctt-acctctcaatt 33660301  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 28538883 - 28538822
Alignment:
Q  246 ttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 307  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28538883 ttaagtatcacttttagagtttaagattgtaatatgtcaattatacccttaacctctcaatt 28538822  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 28841357 - 28841291
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctct 302  Q
    ||||||| || ||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||    
T  28841357 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaacctct 28841291  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 12142295 - 12142180
Alignment:
Q  192 tactccctctgttcctttttaagcgtcacatttgctnnnnnnnnttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatac 291  Q
    |||||||||  |||||||||||| || |||||||||        ||||||| |||||| |||||  |||||| |||||||| ||||||||||||||||||    
T  12142295 tactccctccattcctttttaagtgttacatttgctaaaaaaaattgttcctatttaaatgtcacatttagactttaagatggtaatatgtcaattatac 12142196  T
Q  292 ccttaacctctcaatt 307  Q
    ||||||| ||||||||    
T  12142195 ccttaacgtctcaatt 12142180  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 2626775 - 2626709
Alignment:
Q  236 ttgttcccatttaagtgtcatttttagagtttaagattgtaatatgtcaattatacccttaacctct 302  Q
    ||||||| || ||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||    
T  2626775 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaacctct 2626709  T

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