View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_28 (Length: 297)
Name: NF1619_high_28
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 90 - 297
Target Start/End: Complemental strand, 11819290 - 11819086
Alignment:
| Q |
90 |
aatgccaatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaactagatatatttattgaagtccctcttca |
189 |
Q |
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| T |
11819290 |
aatgctaatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaactagatatatttattgaagtccctcttca |
11819191 |
T |
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| Q |
190 |
acgtcccacttccaagactagatataataagcaaatgaactagatagatatatcatatattcgattattcaaagatggaaatacaatactgggtttggat |
289 |
Q |
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| T |
11819190 |
acgtcccacttccaagactagatataataagcaaatgaactagatagata---gatatattcaattattcaaagatggaaatacaatactgggtttggat |
11819094 |
T |
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| Q |
290 |
gtgtgcca |
297 |
Q |
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| T |
11819093 |
gtgtgcca |
11819086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 95 - 297
Target Start/End: Complemental strand, 11805336 - 11805137
Alignment:
| Q |
95 |
caatcaatgttgaaccatcccatcctcaccaactctgacacaaaatctaggggaagataaatgcaact--------agatatatttattgaagtccctct |
186 |
Q |
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| T |
11805336 |
caatcaatggtgaaccatcccatcctcaccaactctgacacaagatctagggggagataaatgcaactcgcaaatgaactagatatattcaagtccctct |
11805237 |
T |
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| Q |
187 |
tcaacgtcccacttccaagactagatataataagcaaatgaactagatagatatatcatatattcgattattcaaagatggaaatacaatactgggtttg |
286 |
Q |
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| T |
11805236 |
tcaacgacccacttccaaaactagatataataagcaaataaactag-----------atatatccaattattcaaagatggaaatagaatattgggtttg |
11805148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 11827894 - 11827837
Alignment:
| Q |
155 |
atgcaactagatatatttattgaagtccctcttcaacgtcccacttccaagactagat |
212 |
Q |
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| T |
11827894 |
atgcaactagatatatttattgaagtccctcttcaacgtcccacttccaagactagat |
11827837 |
T |
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