View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1619_high_3 (Length: 700)
Name: NF1619_high_3
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 39 - 674
Target Start/End: Complemental strand, 3659972 - 3659353
Alignment:
| Q |
39 |
atgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttcaaaggcaagtaattcaacctagagt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659972 |
atgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtctttgttcaaaggcaagtaattcaacctagagt |
3659873 |
T |
|
| Q |
139 |
gaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcagatggaagttcctcaaatgatgaccaaggc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3659872 |
gaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaatcggatggaagttcctcaaatgatgaccaaggc |
3659773 |
T |
|
| Q |
239 |
gaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaagtgctggtggaggacagtggaggat |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3659772 |
gaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaagtgctggtgggggacagtggaggat |
3659673 |
T |
|
| Q |
339 |
caacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaaaatggaaag |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659672 |
caacacgtagtagcgatgacggagatatagtg---------------gcacaccaagagaagattctgttctctgctccattgccacttaaaatggaaag |
3659588 |
T |
|
| Q |
439 |
cagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgtctaccctttgatttgtaatgttt |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659587 |
cagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattacattatattcatgtaaggctttgtctaccctttgatttgtaatgttt |
3659488 |
T |
|
| Q |
539 |
gattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatatgattcataaatggatttgtt |
638 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
3659487 |
gattggattctaggacaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatttggtt-ataaatggatttgtt |
3659389 |
T |
|
| Q |
639 |
atgttccactttaattggcatttagataattgtggt |
674 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
3659388 |
atgttccacttcaattggaatttagataagtgtggt |
3659353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 311 - 655
Target Start/End: Complemental strand, 3653449 - 3653106
Alignment:
| Q |
311 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
410 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
|
| Q |
411 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
510 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653349 |
ctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggt |
3653250 |
T |
|
| Q |
511 |
tttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaat |
610 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
3653249 |
tttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaat |
3653152 |
T |
|
| Q |
611 |
tggcatatgattc-ataaatggatttgttatgttccactttaattg |
655 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3653151 |
tggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 311 - 568
Target Start/End: Complemental strand, 3657452 - 3657199
Alignment:
| Q |
311 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
410 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| ||||||||| |
|
|
| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
|
| Q |
411 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
510 |
Q |
| |
|
| ||| ||||||| ||||||||||| |||| || ||||||||||| || ||||| | |||| || |||||||| | | |||| |||| |||||| |
|
|
| T |
3657352 |
cagctgcattgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggc |
3657260 |
T |
|
| Q |
511 |
tttgt---ctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
568 |
Q |
| |
|
||||| | | ||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
3657259 |
tttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 330 - 471
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
330 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaa |
429 |
Q |
| |
|
||||||||||||| |||||||| | | | |||||| ||||||||| |||||||| | ||| || |||||| ||||| |||| | || |||||||||||| |
|
|
| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
|
| Q |
430 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 471
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
413 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
471 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University