View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1619_high_31 (Length: 279)
Name: NF1619_high_31
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5842801 - 5842538
Alignment:
| Q |
1 |
tctttgtatattttggttgtccaacaaattttcagattgttcgaataacatttctctaatctttaatatgtataagaaaacctagaatgacacttatttt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5842801 |
tctttatatattttggttgtccaacaagttttcaggttgttcgaataacatttctctaatctttaatatgtataagaaaacctagaatgacacttatttt |
5842702 |
T |
|
| Q |
101 |
aaaacggaaggtgttgtgtattcattttccctcaacaaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5842701 |
aaaacggaaggtgttgtgtattcattttccctcaacaaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaaccgata |
5842602 |
T |
|
| Q |
201 |
atgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttcc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5842601 |
atgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttcc |
5842538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5849518 - 5849248
Alignment:
| Q |
1 |
tctttgtatattttggttgtccaacaaattttcagattgttcgaataacatttctctaatctttaatatgtataagaaaacctagaatgacacttatt-- |
98 |
Q |
| |
|
||||||||||||||| |||||||| || || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5849518 |
tctttgtatattttgattgtccaataagttgtcaggttgttcgaataacatttctttaatctttaatatgtataagaaaacctagaatgacacttgttct |
5849419 |
T |
|
| Q |
99 |
-----ttaaaacggaaggtgttgtgtattcattttccctcaacaaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaaga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5849418 |
aatctttaaaacggaaggtgttgtgtattcattttccctcaacaaggtttaaacttgtttggacagatgggcacaaattaccaagcacttgccaggaaga |
5849319 |
T |
|
| Q |
194 |
acggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttcc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5849318 |
acggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttcc |
5849248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 264
Target Start/End: Complemental strand, 5887021 - 5886836
Alignment:
| Q |
86 |
aatgacacttattttaaaacggaaggtgttgtgtattcatttt-ccctcaacaaggtttaaact---tg---tttggacagatgggcacaaattgccaag |
178 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||| ||||||||||| ||| |||| || |||||||||||||||||||||||| ||| |
|
|
| T |
5887021 |
aatgacacttattttaaaacggaagggacggtctactcatttttccctcaacaagatttgaactgtttggactttggacagatgggcacaaattgctaag |
5886922 |
T |
|
| Q |
179 |
tacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttcc |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||| |
|
|
| T |
5886921 |
cacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcatgaagaaaaaactcatttcttatgataatgttcc |
5886836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 5948316 - 5948185
Alignment:
| Q |
134 |
aacaaggtttaaacttgttt-ggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcata |
232 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||| |||||||| ||| |||| || |||||||| ||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
5948316 |
aacaagatttacacttgttttggacagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattcaaccata |
5948217 |
T |
|
| Q |
233 |
aagaaaaaactcctttctgatgatattgttcc |
264 |
Q |
| |
|
||||||||| |||||||| ||| |||| |||| |
|
|
| T |
5948216 |
aagaaaaaaatcctttctcatggtattattcc |
5948185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 5983911 - 5983798
Alignment:
| Q |
151 |
tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct |
250 |
Q |
| |
|
||||||||||||||| || ||||| || |||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||| | |
|
|
| T |
5983911 |
tttggacagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccataaagaagaaaatcctttgt |
5983812 |
T |
|
| Q |
251 |
gatgatattgttcc |
264 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
5983811 |
catgatattattcc |
5983798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 5920747 - 5920628
Alignment:
| Q |
131 |
ctcaacaaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagca |
230 |
Q |
| |
|
||||| ||| |||||| |||||||||||| ||||| || ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
5920747 |
ctcaaaaagatttaaatttgtttggacaggtgggctcagattgcgaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaacca |
5920648 |
T |
|
| Q |
231 |
taaagaaaaaactcctttct |
250 |
Q |
| |
|
| ||||| ||| ||| |||| |
|
|
| T |
5920647 |
tgaagaagaaaatcccttct |
5920628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 5959393 - 5959307
Alignment:
| Q |
151 |
tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaa |
237 |
Q |
| |
|
||||||||||||||| || ||||| || |||| | |||||||| ||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
5959393 |
tttggacagatgggctcagattgcaaaacacttaactggaagaacagataatgaggtgaaaaacttttggaattctaccataaagaa |
5959307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 42788835 - 42788723
Alignment:
| Q |
152 |
ttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctg |
251 |
Q |
| |
|
|||||||| ||||| || || || ||| | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
42788835 |
ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaactactttcac |
42788736 |
T |
|
| Q |
252 |
atgatattgttcc |
264 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
42788735 |
atgattttgttcc |
42788723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 34626488 - 34626445
Alignment:
| Q |
185 |
ccaggaagaacggataatgaggtgaaaaacttttggaattcaag |
228 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
34626488 |
ccaggtagaacggataatgagattaaaaacttttggaattcaag |
34626445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University