View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_high_33 (Length: 276)

Name: NF1619_high_33
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_high_33
NF1619_high_33
[»] chr5 (2 HSPs)
chr5 (1-237)||(28384979-28385215)
chr5 (1-236)||(12540331-12540566)
[»] chr7 (1 HSPs)
chr7 (1-181)||(3417825-3418005)
[»] chr2 (3 HSPs)
chr2 (1-222)||(13439859-13440081)
chr2 (1-162)||(13448083-13448244)
chr2 (1-237)||(13454478-13454715)
[»] chr4 (5 HSPs)
chr4 (1-179)||(48960994-48961172)
chr4 (4-128)||(48957898-48958022)
chr4 (1-167)||(48965044-48965210)
chr4 (1-163)||(48967177-48967339)
chr4 (17-117)||(48912659-48912759)
[»] chr8 (1 HSPs)
chr8 (1-181)||(12641779-12641959)
[»] chr6 (1 HSPs)
chr6 (2-129)||(12590468-12590595)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28385215 - 28384979
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385215 gagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 28385116  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgag 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385115 aaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgag 28385016  T
Q  201 ttttttgaacttatcctaataacgtcgttgtttcgtc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  28385015 ttttttgaacttatcctaataacgtcgttgtttcgtc 28384979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12540566 - 12540331
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| |||||| |||||| | ||||||||||||| |||||||||| |||    
T  12540566 gagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaag 12540467  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgag 200  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||| ||||||||||||| ||| || ||| | ||| |    
T  12540466 aaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaaggagtattgcatgtg 12540367  T
Q  201 ttttttgaacttatcctaataacgtcgttgtttcgt 236  Q
    |||| |||| ||||||||||||||||||||||||||    
T  12540366 ttttctgaatttatcctaataacgtcgttgtttcgt 12540331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 3417825 - 3418005
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    |||||||| |||||||||||||||||| || | ||||| ||||||  |||||||| ||||||||||||| | ||||||||||||| ||||||| || |||    
T  3417825 gagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaag 3417924  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 181  Q
    ||||||||||||| ||| ||||||||||| |||| ||||||||||||||||  ||||||||| |||| |||| ||||||||    
T  3417925 aaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgattaat 3418005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13440081 - 13439859
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| ||||||||||||||||   ||| ||||||||| || ||||||| | || ||||| |||||| ||||| |||||||||| |||| || |||    
T  13440081 gagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaag 13439982  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tcaaatgaatatggtatga 199  Q
    ||||||| || ||| ||||||||||||| |||||||| || |||||||||||||||||||||  ||| | |||||||||| ||||| || ||| || |      
T  13439981 aaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctat 13439882  T
Q  200 gttttttgaacttatcctaataa 222  Q
    ||||||| ||| |||||||||||    
T  13439881 gttttttcaacctatcctaataa 13439859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 13448244 - 13448083
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| | |||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||| ||||| || |||| || |||| || |||    
T  13448244 gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaag 13448145  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac 162  Q
    ||||||| || ||| ||||||||||||| ||||| || |||||||||||||||| |||||||    
T  13448144 aaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 13448083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13454715 - 13454478
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| ||||||||||||||| |||||| ||||||||| || |||| ||   ||||||||||||||| ||||| |||||||||| |||| || ||     
T  13454715 gagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaa 13454616  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tcaaatgaatatggtatga 199  Q
    ||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||| ||  ||| || ||||||||| ||||| ||  || || | |    
T  13454615 aaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaa 13454516  T
Q  200 gttttttgaacttatcctaataacgtcgttgtttcgtc 237  Q
    ||||||| ||||| | |||||||| | |||||||||||    
T  13454515 gttttttcaactttttctaataacattgttgtttcgtc 13454478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 48961172 - 48960994
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||  |||| | ||| ||||||||||| |||||||| ||| |||| ||||  |||||||||||||| || || ||||||| | |||||||| |||    
T  48961172 gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag 48961073  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta 179  Q
     ||| || || ||||||||||||||||| |||||||| || || |||||||||||||||||||| || |||| ||||||    
T  48961072 taggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta 48960994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 48958022 - 48957898
Alignment:
Q  4 aaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaag 103  Q
    |||||| ||| |||||||||||||||||| |||||||||||  | || | ||| ||||||| |||||| ||||| |||||||||||||||||| ||||||    
T  48958022 aaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaag 48957923  T
Q  104 gtggttcctctcataataatttgtt 128  Q
    |||| || |||||||| ||||||||    
T  48957922 gtggatcatctcataacaatttgtt 48957898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 48965210 - 48965044
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||  | || |||   ||||||| |||||| ||||| ||||||| ||||||  || |||    
T  48965210 gagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaag 48965111  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaa 167  Q
    ||||||| || |||||||| ||||||||||| || || || || || |||||||||||||| |||||    
T  48965110 aaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaa 48965044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 48967339 - 48967177
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||| ||||| || ||||||||||||  || ||||||||||||  | || ||||||||||||||||| || ||||| ||||||||||||||  || |||    
T  48967339 gagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaag 48967240  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagaca 163  Q
    ||||||| |  ||| ||||||||||  | ||||| || || || ||||||||| |||||||||    
T  48967239 aaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagaca 48967177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 48912659 - 48912759
Alignment:
Q  17 gattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttcctctca 116  Q
    ||||||||||| |||| |||||||||||  | || ||||||| |||||||||||| || ||||| |||| ||  ||  |||||||||||||||| |||||    
T  48912659 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttcatctca 48912758  T
Q  117 t 117  Q
    |    
T  48912759 t 48912759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 12641779 - 12641959
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||| ||| |||||||||||||||||| ||| ||||||||| |  | || ||||||||||||| |||||| ||  | ||||||||||  |||||| |||    
T  12641779 gagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttgaag 12641878  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 181  Q
    |||| || || |||||||| |||||||| ||||| ||  |||| |||||||||| ||||||| ||||||||| ||| ||||    
T  12641879 aaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttgaataat 12641959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 12590468 - 12590595
Alignment:
Q  2 agaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaaga 101  Q
    |||| ||| |||| ||||||||||| ||||||  |||||||||  | || |||| ||||  || ||||||||| || || |||| || ||||||| || |    
T  12590468 agaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagactagctgttcaaca 12590567  T
Q  102 aggtggttcctctcataataatttgtta 129  Q
    |||||| |||||| ||||||||||||||    
T  12590568 aggtggctcctctaataataatttgtta 12590595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University