View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_high_37 (Length: 262)

Name: NF1619_high_37
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_high_37
NF1619_high_37
[»] chr4 (4 HSPs)
chr4 (1-250)||(29936389-29936638)
chr4 (1-250)||(51157532-51157781)
chr4 (1-250)||(51146393-51146642)
chr4 (1-247)||(51200320-51200575)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 29936389 - 29936638
Alignment:
Q  1 ataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacat 100  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29936389 ataaagtggcacttctggtggtgaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacat 29936488  T
Q  101 gattctgaaaaagagtgacgaccactgtttccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcatta 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29936489 gatgctgaaaaagagtgacgaccactgtttccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcatta 29936588  T
Q  201 tactgtttgatttgtttgagtcattggcaacattttgttctgaccccttc 250  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29936589 tactgtttgatttatttgagtcattggcaacattttgttctgaccccttc 29936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 51157781 - 51157532
Alignment:
Q  1 ataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacat 100  Q
    ||||||||||| ||| |||||| |||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| || ||    
T  51157781 ataaagtggcacttccggtggtgaagaaactgtcgaaggagaagcttgaggtccaccgtctgcagtttctaagaagccatctgttgcgggtgcaacatat 51157682  T
Q  101 gattctgaaaaagagtgacgaccactgtttccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcatta 200  Q
    ||| |||| |||||||||||||| ||||||||||||||| |||| |||||  ||||| |||| |||||| | | ||| ||| || || ||||  ||| ||    
T  51157681 gatgctgagaaagagtgacgaccgctgtttccagatgacccttggcttatagatcttaaggaaaaagatctctgactcgattgtcttccagaatgcacta 51157582  T
Q  201 tactgtttgatttgtttgagtcattggcaacattttgttctgaccccttc 250  Q
    |||||||||| ||||||   ||||| ||| |||| |||||||| ||||||    
T  51157581 tactgtttgacttgtttttatcatttgcatcattctgttctgaacccttc 51157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 51146642 - 51146393
Alignment:
Q  1 ataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccacat 100  Q
    ||||||||||| |||||||||| |||||  | ||||| |||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| || |     
T  51146642 ataaagtggcacttctggtggtgaagaattttttgaaggagacgcttgaggtcccccatcttcagtttctaagaatccatctgttgtgggtgcaacataa 51146543  T
Q  101 gattctgaaaaagagtgacgaccactgtttccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcatta 200  Q
    ||| |||| |||||||||||||| |||||||||| |||| |||| |||||  ||||| |||| |||||| | | ||| ||| || || ||||  ||| ||    
T  51146542 gatgctgagaaagagtgacgaccgctgtttccagctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttccagaatgcacta 51146443  T
Q  201 tactgtttgatttgtttgagtcattggcaacattttgttctgaccccttc 250  Q
    |||||||||  ||||||  |||||| ||| ||||||| ||||||| ||||    
T  51146442 tactgtttggcttgtttttgtcatttgcatcattttgctctgacctcttc 51146393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 51200575 - 51200320
Alignment:
Q  1 ataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgtt---gtgggtgcacca 97  Q
    ||||||||| | |||||||||| ||||||| |||||| ||| | |||| ||||||||||||||| | ||| |||||||| ||| |   || ||  || ||    
T  51200575 ataaagtggaacttctggtggtgaagaaaccgttgaaggaggaacttgtggtccaccatctgcaatttctgagaagccaactggtacagttggcacaaca 51200476  T
Q  98 catgattctgaaaaagagtgacgaccactgtt------tccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcag 191  Q
      |||| |||| || ||||||||||| |||||      ||||||||||||||| ||||   | |||||||| | |||| ||| ||| |||||| ||||||    
T  51200475 tgtgatgctgagaatgagtgacgaccgctgttcccacctccagatgacacttggcttaaagaccttgaggagagagatctttgactcgatcgtctttcag 51200376  T
Q  192 atagcattatactgtttgatttgtttgagtcattggcaacattttgttctgacccc 247  Q
    |||||| |||||||||||| ||||||  |||||||| |||||| ||||||||||||    
T  51200375 atagcactatactgtttgacttgtttttgtcattggtaacattctgttctgacccc 51200320  T

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