View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_43 (Length: 247)
Name: NF1619_high_43
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_43 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1193835 - 1194065
Alignment:
| Q |
1 |
tttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaa |
100 |
Q |
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| T |
1193835 |
tttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccattcaacagaaaatattggttgaaa |
1193934 |
T |
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| Q |
101 |
ggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggca |
200 |
Q |
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| T |
1193935 |
ggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcaaatcaaatagccaacttgttagcaaaagtatgatcacaaatgggtggca |
1194034 |
T |
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| Q |
201 |
acagaatatccaggcgtctatgtagataatg |
231 |
Q |
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| T |
1194035 |
acagaatatccaggcgtctatgtagataatg |
1194065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 897601 - 897709
Alignment:
| Q |
14 |
ttgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggttgtaagataa |
113 |
Q |
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| T |
897601 |
ttggtttaaaagactcaaataaatctgagtttaagacaattgtttttgcagtttagttttcctttcaacagaaaatattggttgaaaggttgtaagataa |
897700 |
T |
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| Q |
114 |
gtatagaat |
122 |
Q |
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| T |
897701 |
gtatagaat |
897709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1236853 - 1236732
Alignment:
| Q |
1 |
tttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaa |
100 |
Q |
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| T |
1236853 |
tttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtttttgcagtctagttgtcctttcagcagaaaatattggttgaaa |
1236754 |
T |
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| Q |
101 |
ggttgtaagataagtatagaat |
122 |
Q |
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| T |
1236753 |
ggttattagattagtacagaat |
1236732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1182902 - 1183023
Alignment:
| Q |
1 |
tttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaa |
100 |
Q |
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|||| |||||||||||| |||||||||| ||| |||||| | |||||||| ||| |||||||||| || |||| ||||| |||||||||||||||||| |
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| T |
1182902 |
tttgtaacatcaattggtttaaaagactcaaacgaatctgagtttaaggcaattctttttgcagtctagcggtcctttcaaaagaaaatattggttgaaa |
1183001 |
T |
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| Q |
101 |
ggttgtaagataagtatagaat |
122 |
Q |
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| T |
1183002 |
ggttgtaggagaagtatagaat |
1183023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 20088 - 20184
Alignment:
| Q |
7 |
acatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggtt |
104 |
Q |
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||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| || || ||| ||||| | ||||||||||||||||||| |
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| T |
20088 |
acatcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttttgcagtctagttttcctttcaa-aataaatattggttgaaaggtt |
20184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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