View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_50 (Length: 238)
Name: NF1619_high_50
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_50 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33193605 - 33193373
Alignment:
| Q |
1 |
aacgcgattcccatataagtaccactaattaatcacatcacaacacaacacaacattaaacattgtcgtgacatgtttttaggtatgttatccaaaagtg |
100 |
Q |
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| T |
33193605 |
aacgcgattcccatataagtaccactaattaatcacatcacaacacaaca-----ttaaacatggtcgtgacatgtttttaggtatgttatccaaaagtg |
33193511 |
T |
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| Q |
101 |
taattgcatgcatatgatatgacacagctactactagtactaagcttagatccattcccacactactctgtcccaagacaaacaggtagtaggttttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193510 |
taattgcatgcatatgatatgacacagctactactagtactaagcttagatctattcccacactactctgtcccaagacaaacaggtagtaggttttggt |
33193411 |
T |
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| Q |
201 |
ttcccaagatgttcttttccaacttgtgttatcttctt |
238 |
Q |
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|||||||||||||||||||||||||| || |||||||| |
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| T |
33193410 |
ttcccaagatgttcttttccaacttgcgtcatcttctt |
33193373 |
T |
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