View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_high_54 (Length: 236)
Name: NF1619_high_54
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 33660481 - 33660406
Alignment:
| Q |
146 |
cttgaaataacataagcatggttagtgtactgtacatatttaaagagaaatagttgtggagctctatgtattggaa |
221 |
Q |
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| T |
33660481 |
cttggaataacataagcatggttagtgtactgtacatatttaaagtgaaatagttgtggagctctatgtattggaa |
33660406 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 33033858 - 33033925
Alignment:
| Q |
169 |
agtgtactgtacatatttaaagagaaatagttgtggagctctatgtattggaagagtgggtttattgc |
236 |
Q |
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| T |
33033858 |
agtgtcctgtacatatttaaagagaaatagttgtggagctctatgtattggaagagtgggtttattgc |
33033925 |
T |
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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 13250011 - 13250083
Alignment:
| Q |
146 |
cttgaaataacataagcatggttagtgtactgtacatatttaaagagaaatagttgtggagctctatgtattg |
218 |
Q |
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| T |
13250011 |
cttggaataacataagcatggttagtgtcctgtacatatttaaagtgaaatagttgtggagctctatgtattg |
13250083 |
T |
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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 33033727 - 33033767
Alignment:
| Q |
16 |
ccttccactattttttcttcattgttgtacaatgaaccttc |
56 |
Q |
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| T |
33033727 |
ccttccactattttttgttcatagttgtacaatgaaccttc |
33033767 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 28538616 - 28538691
Alignment:
| Q |
146 |
cttgaaataacataagcatggttagtgtactgtacatatttaaagagaaatagttgtggagctctatgtattggaa |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
28538616 |
cttggaataacataagcatggttagtgtactgtacatattaaaagtgaaatagttgtggagctctatgtattggaa |
28538691 |
T |
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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 17352711 - 17352786
Alignment:
| Q |
146 |
cttgaaataacataagcatggttagtgtactgtacatatttaaagagaaatagttgtggagctctatgtattggaa |
221 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
17352711 |
cttggaataacataaacatggttagtgtactgtacatatttgaagtgaaatagttgtggagctatatgtattggaa |
17352786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 17352581 - 17352621
Alignment:
| Q |
16 |
ccttccactattttttcttcattgttgtacaatgaaccttc |
56 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17352581 |
ccttccactgttttttcttcattgttgtacaatgaaccttc |
17352621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 22367273 - 22367313
Alignment:
| Q |
16 |
ccttccactattttttcttcattgttgtacaatgaaccttc |
56 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||| |
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| T |
22367273 |
ccttccactgttttttcttcattattgttcaatgaaccttc |
22367313 |
T |
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