View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_high_56 (Length: 215)

Name: NF1619_high_56
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_high_56
NF1619_high_56
[»] chr8 (6 HSPs)
chr8 (1-214)||(27119944-27120157)
chr8 (44-91)||(26215440-26215487)
chr8 (41-91)||(2699250-2699300)
chr8 (38-91)||(40280278-40280331)
chr8 (45-90)||(40728498-40728543)
chr8 (42-91)||(42597345-42597394)
[»] chr2 (15 HSPs)
chr2 (41-84)||(33267592-33267635)
chr2 (40-95)||(29633012-29633067)
chr2 (38-121)||(7282928-7283015)
chr2 (88-122)||(15171129-15171163)
chr2 (39-91)||(32098382-32098434)
chr2 (41-84)||(3673758-3673801)
chr2 (41-84)||(18962114-18962157)
chr2 (41-84)||(37053545-37053588)
chr2 (45-92)||(44439440-44439487)
chr2 (41-91)||(1939408-1939458)
chr2 (45-91)||(5133716-5133762)
chr2 (41-91)||(17952777-17952827)
chr2 (38-91)||(3227734-3227787)
chr2 (88-121)||(9477859-9477892)
chr2 (46-91)||(39567847-39567892)
[»] chr3 (14 HSPs)
chr3 (38-91)||(44284131-44284184)
chr3 (41-91)||(49586992-49587042)
chr3 (41-90)||(10101552-10101601)
chr3 (41-90)||(10212477-10212526)
chr3 (41-90)||(15304423-15304472)
chr3 (41-93)||(38462223-38462275)
chr3 (40-91)||(40122827-40122878)
chr3 (45-91)||(2128331-2128377)
chr3 (38-91)||(12985396-12985447)
chr3 (41-91)||(22232770-22232820)
chr3 (87-121)||(24235824-24235858)
chr3 (41-91)||(28306102-28306152)
chr3 (41-91)||(42809245-42809295)
chr3 (42-91)||(51278234-51278283)
[»] chr1 (13 HSPs)
chr1 (41-107)||(33723458-33723524)
chr1 (38-91)||(6976892-6976945)
chr1 (38-90)||(26293179-26293231)
chr1 (38-89)||(14737778-14737829)
chr1 (41-84)||(15360845-15360888)
chr1 (41-91)||(5756762-5756812)
chr1 (41-91)||(6074418-6074468)
chr1 (41-83)||(35080146-35080188)
chr1 (43-84)||(15437914-15437955)
chr1 (41-82)||(30815711-30815752)
chr1 (42-91)||(49517014-49517063)
chr1 (38-91)||(50319236-50319289)
chr1 (44-84)||(15687152-15687192)
[»] chr7 (12 HSPs)
chr7 (42-91)||(28340473-28340522)
chr7 (41-91)||(5006585-5006635)
chr7 (41-120)||(17989099-17989180)
chr7 (41-91)||(39591543-39591593)
chr7 (45-91)||(43152982-43153028)
chr7 (41-91)||(45593795-45593845)
chr7 (39-84)||(3241392-3241437)
chr7 (38-91)||(7244646-7244699)
chr7 (87-120)||(28691970-28692003)
chr7 (88-120)||(753361-753393)
chr7 (43-91)||(2894761-2894809)
chr7 (41-93)||(35266841-35266893)
[»] chr5 (12 HSPs)
chr5 (46-120)||(21782650-21782728)
chr5 (40-92)||(10537750-10537802)
chr5 (42-89)||(10363696-10363743)
chr5 (41-84)||(14295457-14295500)
chr5 (41-84)||(28586842-28586885)
chr5 (44-91)||(42583093-42583140)
chr5 (41-91)||(35135738-35135788)
chr5 (38-91)||(7096200-7096253)
chr5 (42-91)||(12407738-12407787)
chr5 (41-82)||(12595816-12595857)
chr5 (70-120)||(13508443-13508497)
chr5 (44-84)||(29117009-29117049)
[»] chr6 (4 HSPs)
chr6 (41-89)||(1402942-1402990)
chr6 (41-84)||(7351684-7351727)
chr6 (38-84)||(31672541-31672587)
chr6 (92-120)||(33067055-33067083)
[»] chr4 (9 HSPs)
chr4 (41-84)||(30338668-30338711)
chr4 (41-91)||(22684592-22684642)
chr4 (38-91)||(51044531-51044585)
chr4 (39-91)||(4191683-4191736)
chr4 (41-90)||(30024645-30024694)
chr4 (53-93)||(2987131-2987171)
chr4 (39-91)||(7731714-7731766)
chr4 (45-89)||(17884014-17884058)
chr4 (40-84)||(24929444-24929488)
[»] scaffold0103 (1 HSPs)
scaffold0103 (41-91)||(51512-51562)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 27119944 - 27120157
Alignment:
Q  1 ttgttttcagcttatttccgttaactattcnnnnnnngcttatgaaaacagtttaactttattttattgtttgttatagaaataccttataaacacttaa 100  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  27119944 ttgttttcagcttatttccgttaactattcaaaaaaagcttatgaaaacagtttaactttatgttatcgtttgttatagaaataccttataaacacttaa 27120043  T
Q  101 ttaagttatttatccaaacaaatttttgtattctaggaataattaagtaatgaaatcaaatttggcttgttttgtcctatagactgttcctggctatgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27120044 ttaagttatttatccaaacaaatttttgtattctaggaataattaagtaatgaaatcaaatttggcttattttgtcctatagactgttcctggctatgat 27120143  T
Q  201 gttgctggggttgt 214  Q
    ||||||||||||||    
T  27120144 gttgctggggttgt 27120157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 26215487 - 26215440
Alignment:
Q  44 gaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||| ||||||||||||||||||  ||||||||||||||| ||||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttata 26215440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 2699300 - 2699250
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||| ||||||||||||||||||  |||||| |||||||| ||||||    
T  2699300 tatgaaaatagtttaactttattttatattttgttgtagaaataacttata 2699250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 40280278 - 40280331
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||| ||| ||||||||||||  |||||| |||||||| ||||||    
T  40280278 gcttatgaaaacaattttactttattttatcttttgttgtagaaataacttata 40280331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 40728498 - 40728543
Alignment:
Q  45 aaaacagtttaactttattttattgtttgttatagaaataccttat 90  Q
    |||||||||| ||||||||||||  ||||||||||||||| |||||    
T  40728498 aaaacagtttgactttattttatcttttgttatagaaataacttat 40728543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 42597394 - 42597345
Alignment:
Q  42 atgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||| ||| ||||||||||||  ||||||||||||||| ||||||    
T  42597394 atgaaaacaattttactttattttatcttttgttatagaaatagcttata 42597345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 33267592 - 33267635
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  33267592 tatgaaaacagtttaactttattttactgtttgttatagaaata 33267635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 29633067 - 29633012
Alignment:
Q  40 ttatgaaaacagtttaactttattttattgtttgttatagaaataccttataaaca 95  Q
    ||||||||||| ||| |||||||| |||| ||||||||||||||| ||||||||||    
T  29633067 ttatgaaaacaatttgactttattctattttttgttatagaaataacttataaaca 29633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 7283015 - 7282928
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata----aacacttaattaagttatttatccaaacaa 121  Q
    ||||||||||||||||| |||| ||||| |  ||| ||||| ||||| ||||||    ||||||||||||| ||||||||||||||||    
T  7283015 gcttatgaaaacagtttgacttcattttttcttttcttataaaaatagcttatacataaacacttaattaaattatttatccaaacaa 7282928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 15171163 - 15171129
Alignment:
Q  88 tataaacacttaattaagttatttatccaaacaaa 122  Q
    |||||||||||||||||||||||||||||||||||    
T  15171163 tataaacacttaattaagttatttatccaaacaaa 15171129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 32098382 - 32098434
Alignment:
Q  39 cttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||| ||| ||||||||||||  ||||||||||||||| ||||||    
T  32098382 cttatgaaaacactttgactttattttatcttttgttatagaaatagcttata 32098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 3673801 - 3673758
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||| ||||||||||||||||  |||||||||||||||    
T  3673801 tatgaaaacaatttaactttattttatattttgttatagaaata 3673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 18962114 - 18962157
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||||||||||||||||  ||||||||| |||||    
T  18962114 tatgaaaacagtttaactttattttatcttttgttataaaaata 18962157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 37053588 - 37053545
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||| ||||||||||||| | |||||||||||||    
T  37053588 tatgaaaacagtttgactttattttattttctgttatagaaata 37053545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 44439440 - 44439487
Alignment:
Q  45 aaaacagtttaactttattttattgtttgttatagaaataccttataa 92  Q
    |||||||||||||||||||||||  |||||||| |||||| |||||||    
T  44439440 aaaacagtttaactttattttatattttgttatggaaataacttataa 44439487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 1939408 - 1939458
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||| ||||| ||||||||||||  ||||||||||||||| ||||||    
T  1939408 tatgaaaatagtttcactttattttatcttttgttatagaaataacttata 1939458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 5133762 - 5133716
Alignment:
Q  45 aaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||| |||||||||||  ||||||||||||||| ||||||    
T  5133762 aaaacagtttatctttattttatcttttgttatagaaatagcttata 5133716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 17952777 - 17952827
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||| ||||| ||||||||||||  ||||||||||||||| ||||||    
T  17952777 tatgaaaatagtttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 3227734 - 3227787
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||| ||||||||| ||||||| ||| ||||||||| | ||||||    
T  3227734 gcttatgaaaacaatttaactttgttttattttttattatagaaacagcttata 3227787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 9477892 - 9477859
Alignment:
Q  88 tataaacacttaattaagttatttatccaaacaa 121  Q
    |||||||||||||||||||| |||||||||||||    
T  9477892 tataaacacttaattaagttgtttatccaaacaa 9477859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 39567892 - 39567847
Alignment:
Q  46 aaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  39567892 aaacaatttaactttattttatcttttgttatagaaatatcttata 39567847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 44284131 - 44284184
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||    
T  44284131 gcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttata 44284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 49586992 - 49587042
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||| ||||||||||||  ||||||||||||||| ||||||    
T  49586992 tatgaaaacagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 10101552 - 10101601
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttat 90  Q
    |||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  10101552 tatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 10212477 - 10212526
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttat 90  Q
    |||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  10212477 tatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 15304423 - 15304472
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttat 90  Q
    |||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  15304423 tatgaaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 38462275 - 38462223
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttataaa 93  Q
    |||||||||||||| ||||||||||||  |||| |||||||||| ||||||||    
T  38462275 tatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaa 38462223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 40122827 - 40122878
Alignment:
Q  40 ttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||||| ||||||||||||  |||||||| |||||| ||||||    
T  40122827 ttatgaaaacagtttgactttattttatcttttgttattgaaatagcttata 40122878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 2128331 - 2128377
Alignment:
Q  45 aaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttata 2128377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 12985396 - 12985447
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||||||| |||||||||||  ||||||||||||| | ||||||    
T  12985396 gcttatgaaaacagtttatctttattttat--tttgttatagaaacaacttata 12985447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 22232820 - 22232770
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||| ||||||||||||  ||||||||| ||||| ||||||    
T  22232820 tatgaaaacagtttgactttattttatcatttgttatataaatagcttata 22232770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 24235824 - 24235858
Alignment:
Q  87 ttataaacacttaattaagttatttatccaaacaa 121  Q
    ||||||||||||||||||||| |||||||||||||    
T  24235824 ttataaacacttaattaagttgtttatccaaacaa 24235858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 28306152 - 28306102
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||| ||||||||||| | ||||||||||| ||| ||||||    
T  28306152 tatgaaaacagtttgactttattttactttttgttatagagatagcttata 28306102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 42809295 - 42809245
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||| ||||||| ||||||||  ||||||||||||||| ||||||    
T  42809295 tatgaaaacaatttaactatattttatcttttgttatagaaatagcttata 42809245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 51278234 - 51278283
Alignment:
Q  42 atgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||| ||||||||| ||  ||||||||||||||| ||||||    
T  51278234 atgaaaacagtttgactttatttaatattttgttatagaaatagcttata 51278283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 33723458 - 33723524
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttataaacacttaattaagtt 107  Q
    |||||||||| ||| ||||||| |||||| || ||||||||||| |||||||||  |||||||||||    
T  33723458 tatgaaaacaatttgactttatgttattgattcttatagaaatagcttataaacgtttaattaagtt 33723524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 6976945 - 6976892
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||| ||||||    
T  6976945 gcttatgaaaatagtttaactttatcttatcttttgttatagaaatatcttata 6976892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 26293179 - 26293231
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttat 90  Q
    ||||||||||||| ||| ||||||||||| | ||||||||||||||| |||||    
T  26293179 gcttatgaaaacaatttgactttattttactttttgttatagaaatagcttat 26293231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 14737778 - 14737829
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaatacctta 89  Q
    ||||||||||||| ||| ||||||||||||  ||||||||||||||| ||||    
T  14737778 gcttatgaaaacaatttgactttattttatcttttgttatagaaataactta 14737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 15360888 - 15360845
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||| ||||||||||||  |||||||||||||||    
T  15360888 tatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 5756762 - 5756812
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||||||||||| | ||  ||||||||||||||| ||||||    
T  5756762 tatgaaaacagtttaactttatatcatcttttgttatagaaatagcttata 5756812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 6074468 - 6074418
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||||||||||| | ||  ||||||||||||||| ||||||    
T  6074468 tatgaaaacagtttaactttatatcatcttttgttatagaaatagcttata 6074418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 35080146 - 35080188
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaat 83  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||    
T  35080146 tatggaaacagtttgactttattttattttttgttatagaaat 35080188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 15437955 - 15437914
Alignment:
Q  43 tgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||| |||| |||||||| |||||||||||||||    
T  15437955 tgaaaacagtttgacttaattttattttttgttatagaaata 15437914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 30815711 - 30815752
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaa 82  Q
    |||||||| ||||||||||||||||||  |||||||||||||    
T  30815711 tatgaaaatagtttaactttattttatcttttgttatagaaa 30815752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 49517063 - 49517014
Alignment:
Q  42 atgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||| ||| ||||||||||||  ||||||||||||||| ||||||    
T  49517063 atgaaaacaatttgactttattttatcttttgttatagaaataacttata 49517014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 50319289 - 50319236
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||  || ||||||||||||  ||||||||||||||| ||||||    
T  50319289 gcttatgaaaacaacttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 15687152 - 15687192
Alignment:
Q  44 gaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  15687152 gaaaacaatttaactttattttatattttgttatagaaata 15687192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 28340473 - 28340522
Alignment:
Q  42 atgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||| ||||||||||||||||||||  ||||||| ||||||    
T  28340473 atgaaaacagtttgactttattttattgtttgttgaagaaatagcttata 28340522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 5006585 - 5006635
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||| ||||||||||||  |||||||||| |||| ||||||    
T  5006585 tatgaaaacagtttgactttattttatcttttgttataggaatagcttata 5006635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 17989099 - 17989180
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttataaa--cacttaattaagttatttatccaaaca 120  Q
    |||||||||||||| ||||||||||||  ||||||||| || ||  ||||| |  |||||||||||||  ||||||||||||    
T  17989099 tatgaaaacagtttgactttattttatattttgttataaaactagtttatatatgcacttaattaagtggtttatccaaaca 17989180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 39591543 - 39591593
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||| ||| ||||||||||||  ||||||||||||||| ||||||    
T  39591543 tatgaaaacaatttgactttattttatcttttgttatagaaataacttata 39591593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 43152982 - 43153028
Alignment:
Q  45 aaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  43152982 aaaacaatttaactttattttatcttttgttatagaaatagcttata 43153028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 45593795 - 45593845
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||||| ||||||||||||  ||||||| ||||||| ||||||    
T  45593795 tatgaaaacagtttgactttattttatgttttgttacagaaatagcttata 45593845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 3241437 - 3241392
Alignment:
Q  39 cttatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||||| |||||||||| |  |||||||||||||||    
T  3241437 cttatgaaaacagtttgactttattttttattttgttatagaaata 3241392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 7244699 - 7244646
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||||||| ||||| ||||||  |||| |||||||||| ||||||    
T  7244699 gcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttata 7244646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 28691970 - 28692003
Alignment:
Q  87 ttataaacacttaattaagttatttatccaaaca 120  Q
    ||||||||||||||||||||| ||||||||||||    
T  28691970 ttataaacacttaattaagttgtttatccaaaca 28692003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 753361 - 753393
Alignment:
Q  88 tataaacacttaattaagttatttatccaaaca 120  Q
    |||||||||||||||||||| ||||||||||||    
T  753361 tataaacacttaattaagttgtttatccaaaca 753393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 2894809 - 2894761
Alignment:
Q  43 tgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||| ||||||| |||||  ||||||||||||||| ||||||    
T  2894809 tgaaaacagttcaactttaatttatcttttgttatagaaatagcttata 2894761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 35266893 - 35266841
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttataaa 93  Q
    |||||||| | ||||||||||||| ||  ||||||||||||||| ||||||||    
T  35266893 tatgaaaaaaatttaactttatttaatcatttgttatagaaatagcttataaa 35266841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 21782650 - 21782728
Alignment:
Q  46 aaacagtttaactttattttattgtttgttatagaaatacctta----taaacacttaattaagttatttatccaaaca 120  Q
    ||||| ||| |||||||||||   ||||||||||||||| ||||    |||||||||||||||||| ||||||||||||    
T  21782650 aaacaatttgactttattttagcttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaaca 21782728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 10537750 - 10537802
Alignment:
Q  40 ttatgaaaacagtttaactttattttattgtttgttatagaaataccttataa 92  Q
    ||||||||| ||||||||||||||||||   |||||||||||||| |||||||    
T  10537750 ttatgaaaatagtttaactttattttatatcttgttatagaaataacttataa 10537802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 10363743 - 10363696
Alignment:
Q  42 atgaaaacagtttaactttattttattgtttgttatagaaatacctta 89  Q
    ||||||||| ||||||||||||||||  ||||||||||||||| ||||    
T  10363743 atgaaaacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 14295500 - 14295457
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||| ||||||||||||  |||||||||||||||    
T  14295500 tatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 28586842 - 28586885
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    |||||||||||||| ||||||||||||  |||||||||||||||    
T  28586842 tatgaaaacagtttgactttattttatcttttgttatagaaata 28586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 42583140 - 42583093
Alignment:
Q  44 gaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  42583140 gaaaacaatttaactttatttcatcttttgttatagaaataccttata 42583093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 35135738 - 35135788
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||| ||||| ||||||||||||  ||||||||||||||| ||||||    
T  35135738 tatgaaaatagtttgactttattttatcttttgttatagaaatatcttata 35135788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 7096200 - 7096253
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||||  |||| ||||||||||||  ||||||||||||||| ||||||    
T  7096200 gcttatgaaaatggtttgactttattttatcttttgttatagaaatagcttata 7096253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 12407738 - 12407787
Alignment:
Q  42 atgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||| || ||||||||||||  ||||||||||||||| ||||||    
T  12407738 atgaaaacagatttactttattttatcttttgttatagaaatagcttata 12407787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 12595816 - 12595857
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaa 82  Q
    |||||||||| ||||||||||||||||  |||||||||||||    
T  12595816 tatgaaaacaatttaactttattttatcttttgttatagaaa 12595857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 13508497 - 13508443
Alignment:
Q  70 tttgttatagaaatacctta----taaacacttaattaagttatttatccaaaca 120  Q
    ||||||||||||||| ||||    |||||||||||||||||| ||||||||||||    
T  13508497 tttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaaca 13508443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 29117009 - 29117049
Alignment:
Q  44 gaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    ||||||||||| ||||||||||||  |||||||||||||||    
T  29117009 gaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 1402990 - 1402942
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaatacctta 89  Q
    |||||||| ||||||||||||||||||  ||||||||||||||| ||||    
T  1402990 tatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 7351684 - 7351727
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||    
T  7351684 tatgaaaacagtttaactttattttatagtttattatataaata 7351727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 31672541 - 31672587
Alignment:
Q  38 gcttatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    ||||||||||||||||| ||||||||||||| ||||| || ||||||    
T  31672541 gcttatgaaaacagtttgactttattttattttttgtcatggaaata 31672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 33067083 - 33067055
Alignment:
Q  92 aacacttaattaagttatttatccaaaca 120  Q
    |||||||||||||||||||||||||||||    
T  33067083 aacacttaattaagttatttatccaaaca 33067055  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 30338668 - 30338711
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    ||||||||||||||||||||||| |||  |||||||||||||||    
T  30338668 tatgaaaacagtttaactttattctatcttttgttatagaaata 30338711  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 22684592 - 22684642
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||| ||| |||||||||||  |||||||||||||||| ||||||    
T  22684592 tatgaaaacaatttgactttattttaccgtttgttatagaaatagcttata 22684642  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 51044531 - 51044585
Alignment:
Q  38 gcttatgaaaaca-gtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||| |||| ||||||||||||  ||||||||||||||| ||||||    
T  51044531 gcttatgaaaacaagtttgactttattttatcttttgttatagaaatagcttata 51044585  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 4191736 - 4191683
Alignment:
Q  39 cttatgaaaacagtttaacttta-ttttattgtttgttatagaaataccttata 91  Q
    |||||||||||||||| |||||| ||||||  ||||||||||||||| ||||||    
T  4191736 cttatgaaaacagtttgactttatttttatcttttgttatagaaatagcttata 4191683  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 30024694 - 30024645
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttat 90  Q
    |||||||||| ||| ||||||||||||  ||||||||||||||| |||||    
T  30024694 tatgaaaacaattttactttattttatcttttgttatagaaataacttat 30024645  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 2987171 - 2987131
Alignment:
Q  53 ttaactttattttattgtttgttatagaaataccttataaa 93  Q
    |||||||||||||||| |||||| |||||||| ||||||||    
T  2987171 ttaactttattttattttttgttgtagaaatagcttataaa 2987131  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 7731766 - 7731714
Alignment:
Q  39 cttatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    ||||||||||||||||||||||||||  |  ||| ||||||||||| ||||||    
T  7731766 cttatgaaaacagtttaactttatttagtcttttattatagaaatagcttata 7731714  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 17884058 - 17884014
Alignment:
Q  45 aaaacagtttaactttattttattgtttgttatagaaatacctta 89  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||    
T  17884058 aaaacaatttaactttattttatcttttgttatagaaatagctta 17884014  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24929488 - 24929444
Alignment:
Q  40 ttatgaaaacagtttaactttattttattgtttgttatagaaata 84  Q
    ||||||||||||||  ||||||||||||  |||||||||||||||    
T  24929488 ttatgaaaacagttagactttattttatcttttgttatagaaata 24929444  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 51562 - 51512
Alignment:
Q  41 tatgaaaacagtttaactttattttattgtttgttatagaaataccttata 91  Q
    |||||||||| ||||||||||||||||  ||||||||| ||||| ||||||    
T  51562 tatgaaaacaatttaactttattttatattttgttataaaaataacttata 51512  T

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