View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_low_10 (Length: 556)

Name: NF1619_low_10
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_low_10
NF1619_low_10
[»] chr6 (7 HSPs)
chr6 (54-486)||(28327214-28327653)
chr6 (54-486)||(28504850-28505289)
chr6 (185-502)||(28236330-28236647)
chr6 (190-502)||(28295780-28296092)
chr6 (190-502)||(28515981-28516293)
chr6 (189-502)||(28187226-28187538)
chr6 (190-495)||(28244707-28245012)
[»] scaffold0019 (1 HSPs)
scaffold0019 (168-495)||(56350-56676)
[»] scaffold0038 (2 HSPs)
scaffold0038 (185-502)||(36492-36809)
scaffold0038 (190-495)||(44869-45174)
[»] chr5 (1 HSPs)
chr5 (275-387)||(16693016-16693128)
[»] chr2 (1 HSPs)
chr2 (259-375)||(3281580-3281696)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 54 - 486
Target Start/End: Original strand, 28327214 - 28327653
Alignment:
Q  54 ttttttactaatcctattaatgtttatgctacacttttttattctgttataatatgtaaatttctataaataaatgtgtttaattcgtaacatatataca 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | | ||| | |||||| |||| |||||||||| |||    
T  28327214 ttttttactaatcctattaatgtttatgctacacttttttattcccttataatatgtaaatttatcttaattagtgtgttcaatttgtaacatatacaca 28327313  T
Q  154 tgtat---gtatttcggttgatttgtgttttt----catccgttttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaa 246  Q
    | |||   | ||   |||||||||||||||||    | | || ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  28327314 tatattatgaatcatggttgatttgtgtttttttttcttgcgctttaagggatcaagtaaaattgaaattatatatttggaattcccgtcatctgagcaa 28327413  T
Q  247 gaggaggtcgattggaagggagatgaactcaaaaagatgcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttc 346  Q
     ||| ||| ||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  28327414 aaggtggtagattggaagggagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttc 28327513  T
Q  347 ctaacagtttgaaagtattggaatggcataaatatccttcatggttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaag 446  Q
    || | ||| | | |||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||| ||||||| || | | ||||    
T  28327514 ctgatagtattagagtattggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaagaaacgttctgtatgcaagctacaggaaag 28327613  T
Q  447 taaattttcatcatatgagttgcgtggcacaatgaaggta 486  Q
    | | |||||||||||||||||| |||||||||||||||||    
T  28327614 tgacttttcatcatatgagttgtgtggcacaatgaaggta 28327653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 54 - 486
Target Start/End: Original strand, 28504850 - 28505289
Alignment:
Q  54 ttttttactaatcctattaatgtttatgctacacttttttattctgttataatatgtaaatttctataaataaatgtgtttaattcgtaacatatataca 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | | ||| | |||||| |||| |||||||||| |||    
T  28504850 ttttttactaatcctattaatgtttatgctacacttttttattcccttataatatgtaaatttatcttaattagtgtgttcaatttgtaacatatacaca 28504949  T
Q  154 tgtat---gtatttcggttgatttgtgttttt----catccgttttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaa 246  Q
    | |||   | ||   |||||||||||||||||    | | || ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  28504950 tatattatgaatcatggttgatttgtgtttttttttcttgcgctttaagggatcaagtaaaattgaaattatatatttggaattcccgtcatctgagcaa 28505049  T
Q  247 gaggaggtcgattggaagggagatgaactcaaaaagatgcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttc 346  Q
     ||| ||| ||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  28505050 aaggtggtagattggaagggagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttc 28505149  T
Q  347 ctaacagtttgaaagtattggaatggcataaatatccttcatggttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaag 446  Q
    || | ||| | | |||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||| ||||||| || | | ||||    
T  28505150 ctgatagtattagagtattggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaagaaacgttctgtatgcaagctacaggaaag 28505249  T
Q  447 taaattttcatcatatgagttgcgtggcacaatgaaggta 486  Q
    | | |||||||||||||||||| |||||||||||||||||    
T  28505250 tgacttttcatcatatgagttgtgtggcacaatgaaggta 28505289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 185 - 502
Target Start/End: Original strand, 28236330 - 28236647
Alignment:
Q  185 tccgttttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagat 284  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||| |||||    
T  28236330 tccgctttaagggatcaagtgaaattgaaattatatatttggaattcccgtcatctgaggaagaggtgatagattggaagggagatgaactcaagaagat 28236429  T
Q  285 gcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatcct 384  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  28236430 gcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtattggaatggcctaaatatcct 28236529  T
Q  385 tcatggttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaagg 484  Q
    ||| || || ||||||||||| | |  |||||||||||||| |||||||||||   | ||||| |  ||||||||| |||||||||||||||| ||||||    
T  28236530 tcaaggatcataccatctgatttctgcccaaagaaactttcaatatgcaaactaaaggaaagtgacctttcatcatttgagttgcgtggcacagtgaagg 28236629  T
Q  485 tacgtgtaaatttaatga 502  Q
    || |||||||| ||||||    
T  28236630 tatgtgtaaatgtaatga 28236647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 190 - 502
Target Start/End: Complemental strand, 28296092 - 28295780
Alignment:
Q  190 tttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagatgcaaa 289  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| | | || |||||||||||||| ||||| ||||||||||    
T  28296092 tttaagggatcaagtcaaattgaaattatatatttggaattcccgttatctgaggaagaggtgatagaatggaagggagatgagctcaagaagatgcaaa 28295993  T
Q  290 atctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatccttcatg 389  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  28295992 acctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtattggaatggcctaaatatccttcacg 28295893  T
Q  390 gttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaaggtacgt 489  Q
    | || ||||||||||| |||  ||||||||||||||||||||||| || | ||||||| | |||   |||| || ||||| |||||||||||||||| ||    
T  28295892 gatcataccatctgatttttgcccaaagaaactttctatatgcaagctacagcaaagtgactttatttcatttgggttgcatggcacaatgaaggtatgt 28295793  T
Q  490 gtaaatttaatga 502  Q
    |||||| ||||||    
T  28295792 gtaaatgtaatga 28295780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 190 - 502
Target Start/End: Original strand, 28515981 - 28516293
Alignment:
Q  190 tttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagatgcaaa 289  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| | | || |||||||||||||| ||||| ||||||||||    
T  28515981 tttaagggatcaagtcaaattgaaattatatatttggaattcccgttatctgaggaagaggtgatagaatggaagggagatgagctcaagaagatgcaaa 28516080  T
Q  290 atctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatccttcatg 389  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  28516081 acctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtattggaatggcctaaatatccttcacg 28516180  T
Q  390 gttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaaggtacgt 489  Q
    | || ||||||||||| |||  ||||||||||||||||||||||| || | ||||||| | |||   |||| || ||||| |||||||||||||||| ||    
T  28516181 gatcataccatctgatttttgcccaaagaaactttctatatgcaagctacagcaaagtgactttatttcatttgggttgcatggcacaatgaaggtatgt 28516280  T
Q  490 gtaaatttaatga 502  Q
    |||||| ||||||    
T  28516281 gtaaatgtaatga 28516293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 189 - 502
Target Start/End: Original strand, 28187226 - 28187538
Alignment:
Q  189 ttttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagatgcaa 288  Q
    |||||||||||||| | |||||||||||||||||||||||| | |||||| |||| ||| ||  || ||||||||||||||||||||  | |||||||||    
T  28187226 ttttaagggatcaagtgaaattgaaattatatatttggaatgctcgtcatctgagaaagtggtagtagattggaagggagatgaactggagaagatgcaa 28187325  T
Q  289 aatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatccttcat 388  Q
    || ||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||     
T  28187326 aagctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtttgagagtattggaatggcaaaaatatccttcac 28187425  T
Q  389 ggttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaaggtacg 488  Q
    || || ||||||||||| |||| |||||||||||||||||||||||||| | ||||||| | ||| |||||| ||||||||||||||||||||||||| |    
T  28187426 gggtcataccatctgat-ttttcccaaagaaactttctatatgcaaactacagcaaagtgactttacatcatttgagttgcgtggcacaatgaaggtatg 28187524  T
Q  489 tgtaaatttaatga 502  Q
    ||||||| ||||||    
T  28187525 tgtaaatgtaatga 28187538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 190 - 495
Target Start/End: Original strand, 28244707 - 28245012
Alignment:
Q  190 tttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagatgcaaa 289  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||| || |||||| |||    
T  28244707 tttaagggatcaagtgaaattgaaattatatatttggaattcccgtcatctgaggaagaggtggtagattgggagggagatgaactgaagaagatggaaa 28244806  T
Q  290 atctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatccttcatg 389  Q
    | ||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||| |||||||||||||      
T  28244807 acctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtattggaatggcctaaatatccttcacc 28244906  T
Q  390 gttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaaggtacgt 489  Q
    | || ||||||||||| |||  ||||||||||||||||||||||| || |  |||||| | |||   |||| || ||| | |||||||||||||||| ||    
T  28244907 ggtcataccatctgatttttgcccaaagaaactttctatatgcaagctacaacaaagtgactttatttcatttgggtttcatggcacaatgaaggtatgt 28245006  T
Q  490 gtaaat 495  Q
    ||||||    
T  28245007 gtaaat 28245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 168 - 495
Target Start/End: Complemental strand, 56676 - 56350
Alignment:
Q  168 ttgatttgtgtttttcatccgttttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaaggga 267  Q
    ||||| |||||||||  |||| ||||||||||||| | |||||||||||||||||||||||||||||| || |||| |||||| ||| ||||||||||||    
T  56676 ttgatatgtgtttttt-tccgctttaagggatcaagtgaaattgaaattatatatttggaattcccgttatgtgagaaagaggtggtagattggaaggga 56578  T
Q  268 gatgaactcaaaaagatgcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattgg 367  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  56577 gatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaacatcttcctaacagtttgagagtattgg 56478  T
Q  368 aatggcataaatatccttcatggttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagtt 467  Q
    |||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||| | ||| ||||||  |||||    
T  56477 aatggcgtaaatatccttcacggttcgtaccatctgatattttcccgaagaaactttctatatgcaaactacagcaaagtgactttacatcattcgagtt 56378  T
Q  468 gcgtggcacaatgaaggtacgtgtaaat 495  Q
    |||||| ||||| |||||| || |||||    
T  56377 gcgtgggacaatcaaggtatgtttaaat 56350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 185 - 502
Target Start/End: Original strand, 36492 - 36809
Alignment:
Q  185 tccgttttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagat 284  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||| |||||    
T  36492 tccgctttaagggatcaagtgaaattgaaattatatatttggaattcccgtcatctgaggaagaggtgatagattggaagggagatgaactcaagaagat 36591  T
Q  285 gcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatcct 384  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  36592 gcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtattggaatggcctaaatatcct 36691  T
Q  385 tcatggttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaagg 484  Q
    ||| || || ||||||||||| | |  |||||||||||||| |||||||||||   | ||||| |  ||||||||| |||||||||||||||| ||||||    
T  36692 tcaaggatcataccatctgatttctgcccaaagaaactttcaatatgcaaactaaaggaaagtgacctttcatcatttgagttgcgtggcacagtgaagg 36791  T
Q  485 tacgtgtaaatttaatga 502  Q
    || |||||||| ||||||    
T  36792 tatgtgtaaatgtaatga 36809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 190 - 495
Target Start/End: Original strand, 44869 - 45174
Alignment:
Q  190 tttaagggatcaaataaaattgaaattatatatttggaattcccgtcatttgaggaagaggaggtcgattggaagggagatgaactcaaaaagatgcaaa 289  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||| || |||||| |||    
T  44869 tttaagggatcaagtgaaattgaaattatatatttggaattcccgtcatctgaggaagaggtggtagattgggagggagatgaactgaagaagatggaaa 44968  T
Q  290 atctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggcataaatatccttcatg 389  Q
    | ||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||| |||||||||||||      
T  44969 acctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtattggaatggcctaaatatccttcacc 45068  T
Q  390 gttcgtaccatctgatatttttccaaagaaactttctatatgcaaacttccgcaaagtaaattttcatcatatgagttgcgtggcacaatgaaggtacgt 489  Q
    | || ||||||||||| |||  ||||||||||||||||||||||| || |  |||||| | |||   |||| || ||| | |||||||||||||||| ||    
T  45069 ggtcataccatctgatttttgcccaaagaaactttctatatgcaagctacaacaaagtgactttatttcatttgggtttcatggcacaatgaaggtatgt 45168  T
Q  490 gtaaat 495  Q
    ||||||    
T  45169 gtaaat 45174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 16693016 - 16693128
Alignment:
Q  275 tcaaaaagatgcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgaaagtattggaatggca 374  Q
    |||| ||||||  ||| ||||||||| ||||| |||||||||||  |||||||||||| || ||| ||||||| || ||||| | |||  | ||||||||    
T  16693016 tcaagaagatgataaacctcaaaacacttattattaagaatggtcacttttccaaaggaccaaaacatcttccaaatagtttaagagtgcttgaatggca 16693115  T
Q  375 taaatatccttca 387  Q
    || ||||||||||    
T  16693116 tagatatccttca 16693128  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 3281580 - 3281696
Alignment:
Q  259 tggaagggagatgaactcaaaaagatgcaaaatctcaaaacaattattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttga 358  Q
    ||||| ||||||||| |||| |||||| |||| ||||||||| |||||||||| | | ||  ||||||||||  || |  | |||||||||| ||||| |    
T  3281580 tggaaaggagatgaattcaagaagatgaaaaacctcaaaacacttattgttaaaactagttccttttccaaacctcttgtacatcttcctaatagtttaa 3281679  T
Q  359 aagtattggaatggcat 375  Q
    ||||| |||||||||||    
T  3281680 aagtactggaatggcat 3281696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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