View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_11 (Length: 522)
Name: NF1619_low_11
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 45534170 - 45533671
Alignment:
| Q |
18 |
atagggacacaccttatcctagcagtgtttgtgcttcataattaggtaataaccaaccaatacgagtatcatccatcattaacttaattaacttttattg |
117 |
Q |
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| T |
45534170 |
atagggacacgccttatccgaggagtgtttgtgcttcataattaggtaataaccaaccaatatgagtatcatccatcattaacttaattaacttttattg |
45534071 |
T |
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| Q |
118 |
acattttatttgcacctttatgaatgctagatatgtaaattgacgggtcacactcaacatttttaatgtgttctgtttctctcttacatttctcctcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45534070 |
acattttatttgcacctttatgaatgctagatatgtaaattgacgggtcacactcaacatttttaatgtgttctgtttgtctcttacatttctcctcatt |
45533971 |
T |
|
| Q |
218 |
ttctggttcctcgannnnnnnaagctccaggttggccaannnnnnnccccttcattttctcacttttattggtttctttaccttctctcttgcatgtttt |
317 |
Q |
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| T |
45533970 |
ttctggttcctcgatttttttaagctccaggttggccaattttttttcccttcattttctcacttttattggtttctttaccttctctcttgcatgtttt |
45533871 |
T |
|
| Q |
318 |
aaaattgttctttctcatttcttggcgaattgttcattccatttcattgaatgtttcatatctgagttcatactgttgatggatcctattcccctcgtca |
417 |
Q |
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| T |
45533870 |
aaaattgttctttctcatttcttggcgaattgttcattccatttcattgaatgtttcatatctgagttcatactgttgatggatcctattcccctcgtca |
45533771 |
T |
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| Q |
418 |
aggaatctttcatctatgcaagatgaaaaacaatgagaggttgaatatgccattagcccttatctcttgtaccgggaaccaactgacttttcttctcact |
517 |
Q |
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| T |
45533770 |
aggaatctttcatctatgcaagatgaaaaacaatgagaggttgaatatgccattagcccttatctcttgtaccgggaaccaactgacttttcttctcact |
45533671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 465
Target Start/End: Complemental strand, 35213343 - 35213217
Alignment:
| Q |
335 |
tttcttggcgaattgttcattccatttcattgaatgtttcatatctgagttcatactgttgatggatcctattcccctcgtcaaggaatctttcatctat |
434 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| |||||||||||| | ||||| || |||||| | || |
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| T |
35213343 |
tttcttggcgaattgttcattccatttccttgaatatttcatatgtgagttca----attgattgatcctattccctccatcaagtaaactttcagcaat |
35213248 |
T |
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| Q |
435 |
gcaagatgaaaaacaatgagaggttgaatat |
465 |
Q |
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||| ||| ||||| |||||||||||||||| |
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| T |
35213247 |
gcatgataaaaaaacatgagaggttgaatat |
35213217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 35202786 - 35202747
Alignment:
| Q |
189 |
tctgtttctctcttacatttctcctcattttctggttcct |
228 |
Q |
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| T |
35202786 |
tctgtttctctcttacaattctcctcattttctggttcct |
35202747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 35216723 - 35216625
Alignment:
| Q |
272 |
ttttctcacttttattggtttctttaccttctctcttgcatgttttaaaattgttctttctcatttcttggcgaattgttcattccatttcattgaatg |
370 |
Q |
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|||||||| ||||||| |||||| |||||| | |||| ||||||||| | ||||||||| ||||||||| |||| |||||||||||| ||||||| |
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| T |
35216723 |
ttttctcatgtttattgctttcttcaccttcacgcttgtatgttttaactctattctttctcctttcttggcaaattattcattccatttacttgaatg |
35216625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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