View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_12 (Length: 521)
Name: NF1619_low_12
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 223 - 456
Target Start/End: Original strand, 3605498 - 3605730
Alignment:
| Q |
223 |
gatgaaattgtgaataaactcatagcattcaggtttacaacaaaataagcataatgcatacaattgtgacaaaatacaggtgtctggattatccagcata |
322 |
Q |
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| T |
3605498 |
gatgaaattgtgaataaactcatagcattcaagtttacagcaaaataagcataatgcatacaattgtgacaaaatacaggtg-ctggaatatccagcata |
3605596 |
T |
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| Q |
323 |
tggatggatctaacgttgaagacgcaaaagtcgttctttgaatttttaatagacaccaaaagaagaaaatccgccaatgaccctattgaataccgcaata |
422 |
Q |
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| T |
3605597 |
tggatggatctgacgttgaagacgcaaaaatcattctttgaatttttaatagacatcaaatgaagaaaatccgccaatgaccttattgaataccgcaata |
3605696 |
T |
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| Q |
423 |
agacgagaaatcaaattatcgaaccaagaagacg |
456 |
Q |
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| T |
3605697 |
aaacgagaaatcaaattatcgaaccaagaagacg |
3605730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3605277 - 3605396
Alignment:
| Q |
1 |
aagtctcaaatcattcccaccaaaccaattcaaatgagtttaatataatatggaactctgcctatggaaagaattagtgaatgtatctaataaacaatat |
100 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3605277 |
aagtctcaaatcacttccaccaaaccaattcaaatgagtttaatataatatggaactctgcctatggaaagaattagtgaatgtatctaataaacaatat |
3605376 |
T |
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| Q |
101 |
tactttacagttagttcacc |
120 |
Q |
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||||||| |||||||||||| |
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| T |
3605377 |
tactttagagttagttcacc |
3605396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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