View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_13 (Length: 458)
Name: NF1619_low_13
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 205 - 443
Target Start/End: Complemental strand, 32010092 - 32009854
Alignment:
| Q |
205 |
ttcggtacgtgattgcatcactctcacattataaatatgtaaatgaggtaggtatgtatggagataactctttacccaatttatacacctaaagtatact |
304 |
Q |
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| T |
32010092 |
ttcggtacgtgattgcatcactctcacattataaatatgtaaatgaggtaggtatgtatggagataactctttacccaatttatacacctaaagtatact |
32009993 |
T |
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| Q |
305 |
tgaagtgcagtaccgcccaacatttgatacaatatatgttgcaactgcctaaaaccatttacttcatttaaaaatatgtactatatatattaatacatat |
404 |
Q |
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| T |
32009992 |
tgaagtgcagtaccgcccaacatttgatacaatatatgttgcaactgcctaaaaccatttacttcatttaaaaatatgtactatatatattaatacatat |
32009893 |
T |
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| Q |
405 |
taataccgtataccaactcaaggactctcgactcattac |
443 |
Q |
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| T |
32009892 |
taataccgaataccaactcaaggactcgcgactcattac |
32009854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 32010253 - 32010128
Alignment:
| Q |
10 |
attatacttttattatctgatgaactaaaatttaaattctgataaagagatgtgttctatttagtgtttgatataacttataagtgaaaaattggattaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32010253 |
attatacttttattatctgatgaactaaaatttaaattctgataaagagatgtgttctatttagtgtttgatataacttataagtgaaaaattggattaa |
32010154 |
T |
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| Q |
110 |
atcaatattttaaaactctagtgatg |
135 |
Q |
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| T |
32010153 |
atcaatattttaaaactctagtgatg |
32010128 |
T |
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