View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_15 (Length: 419)
Name: NF1619_low_15
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 58 - 403
Target Start/End: Original strand, 32902488 - 32902833
Alignment:
| Q |
58 |
attttttgagaatttggtattctattatttacatttggtattctattcaaatatcatttttcagttaatagagagagtgagtgcagtgttagaaataaat |
157 |
Q |
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| T |
32902488 |
attttttgagaatttggtattctaatatttacatttggtattttattcaaatatcatttttcagttaatagagagagtgagtgcagtattagagataaat |
32902587 |
T |
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| Q |
158 |
ttaaaatgagttagattaaatgcatatagaccatgataaatttgggaggaatgctc-taatttaaccattgaaaaatgtggtccttgatggaccaatttt |
256 |
Q |
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| T |
32902588 |
ttaaaatgagttagattaaatacatataaaccatcataaatttgggaggaatgctcttaatttaaccattgaaaaatgtggtccatggtggaccaatttt |
32902687 |
T |
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| Q |
257 |
cttacgggtcaaattcacacggaaccggcaaacctatgacctttgtctgaattactgcattatttctttgcaatctatttgtaggattggccaatactat |
356 |
Q |
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| T |
32902688 |
cttacgggtcaaattcatacggaaccggcaaacctatgacctttgtc-gaattgctgcactatttctttgcaatctatttgcaggattggccaatactat |
32902786 |
T |
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| Q |
357 |
catggttgaggacctttcatgttaaggtcctagctcacagtgatttc |
403 |
Q |
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| T |
32902787 |
catggttgaggacctttcatgttaaggtcctagctcacagtgatttc |
32902833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 44806973 - 44806929
Alignment:
| Q |
224 |
attgaaaaatgtggtccttgatggaccaattttcttacgggtcaa |
268 |
Q |
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| T |
44806973 |
attgaaaaatgtggtccatgatggaccaattttcttacgggtcaa |
44806929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 44807073 - 44806977
Alignment:
| Q |
108 |
atatcatttttcagttaatagagagagtgagtgcagtgttagaaataaatttaaaatgagttagattaaatgcatatagaccatgataaatttggga |
204 |
Q |
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| T |
44807073 |
atattatttttcatttaatggagagagtgagtatagtgttagagataaagttaaattgagttagattgaatacatataaaccatagtaactttggga |
44806977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 14094190 - 14094240
Alignment:
| Q |
175 |
aaatgcatatagaccatgataaatttgggaggaatgctctaatttaaccat |
225 |
Q |
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| T |
14094190 |
aaatacatatagaccatggtaaacttgggaggaatgctctaatctaaccat |
14094240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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