View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1619_low_17 (Length: 402)
Name: NF1619_low_17
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_17 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 39227519 - 39227904
Alignment:
| Q |
17 |
agttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39227519 |
agttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagatt |
39227618 |
T |
|
| Q |
117 |
ccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39227619 |
ccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttc |
39227718 |
T |
|
| Q |
217 |
aaaccacagtttgcaagatcaagatgaactcaattaacaaggttaacaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39227719 |
aaaccacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggt |
39227818 |
T |
|
| Q |
317 |
gtgtaagattcgtaagatttacaagctcaaaaggtatgaaaactaccaaaccattaactgcaagggacaactagttaagctgcaac |
402 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
39227819 |
gtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctgcaac |
39227904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 25546718 - 25547103
Alignment:
| Q |
17 |
agttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25546718 |
agttcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttccatttaactcattgtttgacatatcaagagatttcaaactactaagatt |
25546817 |
T |
|
| Q |
117 |
ccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25546818 |
ccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcgtagctcatgtggaattgaacctttc |
25546917 |
T |
|
| Q |
217 |
aaaccacagtttgcaagatcaagatgaactcaattaacaaggttaacaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25546918 |
aaaccacagtttgcaagatcaagatgaagtaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggt |
25547017 |
T |
|
| Q |
317 |
gtgtaagattcgtaagatttacaagctcaaaaggtatgaaaactaccaaaccattaactgcaagggacaactagttaagctgcaac |
402 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
25547018 |
gtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctgcaac |
25547103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 16733618 - 16733490
Alignment:
| Q |
90 |
atcaagagatttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagtttt |
189 |
Q |
| |
|
|||||||| ||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||||| |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
16733618 |
atcaagagcattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgatttttttgcaagaaaagtgtatctagcttgttaagttga |
16733519 |
T |
|
| Q |
190 |
cctagctcatgtggaattgaacctttcaa |
218 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |
|
|
| T |
16733518 |
cctaactcaagtggaattgaacctttcaa |
16733490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University