View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_2 (Length: 787)
Name: NF1619_low_2
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 678; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 19 - 785
Target Start/End: Complemental strand, 32378427 - 32377657
Alignment:
| Q |
19 |
tatcacgtatgcctcactcactttactatatcttctgcannnnnnnattaaacaaaagaataaaaaatttctattaattaatcgtggtaccaatgaccat |
118 |
Q |
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| T |
32378427 |
tatcacgtatgcctcactcactttactatatcttctgcatttttttattaaacaaaagaataaaaaatttctactaattaatcgtggtaccaatgatcat |
32378328 |
T |
|
| Q |
119 |
tctacctctaaggtttattccttggaaattggatgttattgtttgattctgatgtttctattatatgatcattcattttttcggttagtttcttaattat |
218 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32378327 |
tctgcctctaaggtttatgccttggaaattggatgttattgtttgattctgatgtttctattatatgatcattcattttt-cggttagtttcttaattat |
32378229 |
T |
|
| Q |
219 |
ggttttagaaat----tgtt-ataattaaggttgtttaatgttcactatcacgtttcttaatacaagtaattagttctgtcacttctgtttattatggat |
313 |
Q |
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| T |
32378228 |
gtttttagtaatattatgtttataattaaggttgtttaatgttcactatcacgtttcttaatacaagtaattagttctgtcacttctgtttattatggat |
32378129 |
T |
|
| Q |
314 |
ttgaaaacttactacaaatcataatgttatgtctttgcagtaatttttctatactgataccgttagtggtatggttctgattcttattgtgaaagctcaa |
413 |
Q |
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| T |
32378128 |
ttgaaaacttactacagatcataatgttatgtctttgcagtaattttactatactgataccgttagtggtatggttctgattcttattgtgaaagctcaa |
32378029 |
T |
|
| Q |
414 |
agttcagtatcagaatgatttcagttgaaaatggtgttgtaaatcaccaagatgaaattgaagaatctaatgggagtcaagtgaaggaatttgcttctat |
513 |
Q |
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| T |
32378028 |
agttcagtatcagaatgatttcagttgaaaatggtattgtaaatcaccaagatgaaattgaagaatctaatgggagtcaagtgaaggaatttgcttctat |
32377929 |
T |
|
| Q |
514 |
agatatttcaaccactcaaaaaacatttccaagcaatgaaaatcctcaaagaaagtttctcaaaattggttctgcatctgccaaagtcaatgagcttgtt |
613 |
Q |
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| T |
32377928 |
agatatttcaaccactccaaaaacatttccaagcaatgaaaatcctcaaagaaagtttctcaaaattggttctgcatctgccaaagtcaatgagcttgtt |
32377829 |
T |
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| Q |
614 |
attgaaaaagaccagatttcacagtctgtgccttctccgcgttccgatggcttaaagtcgcgattcagtaccatgttttctcagaaacttgaacggaatt |
713 |
Q |
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| T |
32377828 |
attgaaaaagaccagatttcacagtctgtgccttctccgcgttccgatggcttaaagtcgcgattcagtaccatgttttctcagaaacttgaacggaatt |
32377729 |
T |
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| Q |
714 |
cagtcaagaaaaggttcaaggaatggatcaaaaacccaatgaacatggcccttttcgcgtggggaatctgtg |
785 |
Q |
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| T |
32377728 |
cagtcaagaaaaggttcaaggaatggatcaaaaacccaatgaacatggcccttttcgcgtggggaatctgtg |
32377657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 303 - 775
Target Start/End: Complemental strand, 32366454 - 32365982
Alignment:
| Q |
303 |
ttattatggatttgaaaacttactacaaatcataatgttatgtctttgcagtaatttttctatactgataccgttagtggtatggttctgattcttattg |
402 |
Q |
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| T |
32366454 |
ttattatggatttgaaaacttactacagatcttaatgttatatctttgcagtaatccttctataactataccattagtggtatagttcagattctgattg |
32366355 |
T |
|
| Q |
403 |
tgaaagctcaaagttcagtatcagaatgatttcagttgaaaatggtgttgtaaatcaccaagatgaaattgaagaatctaatgggagtcaagtgaaggaa |
502 |
Q |
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| T |
32366354 |
tgaaagctcaaagttaagtatcagaatgatttcagttgaaaatggtatcacaaatcaccaagatgaaattgaagaatctaaagggagtcaagtgaaggag |
32366255 |
T |
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| Q |
503 |
tttgcttctatagatatttcaaccactcaaaaaacatttccaagcaatgaaaatcctcaaagaaagtttctcaaaattggttctgcatctgccaaagtca |
602 |
Q |
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| T |
32366254 |
tttgcttctgtagatatttcaactcctacacaaacatttccgagcaatgaaaatcctcaaagagagtttctcaaattcggttctgcatctgccaaattca |
32366155 |
T |
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| Q |
603 |
atgagcttgttattgaaaaagaccagatttcacagtctgtgccttctccgcgttccgatggcttaaagtcgcgattcagtaccatgttttctcagaaact |
702 |
Q |
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| T |
32366154 |
aggaacttgttattgaaaaggaccaaatttcacagtctgtgccttctccgcgttctgatagcctaaagtcgcgtttcagtacgatgtttgctcagaaact |
32366055 |
T |
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| Q |
703 |
tgaacggaattcagtcaagaaaaggttcaaggaatggatcaaaaacccaatgaacatggcccttttcgcgtgg |
775 |
Q |
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|||| |||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32366054 |
tgaatggaattcagtcaagaaaatatgcatggaatggatcgaaaacccaatgaacatggcccttttcgcgtgg |
32365982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 32372597 - 32372543
Alignment:
| Q |
234 |
tataattaaggttgtttaatgttcactatcacgtttcttaatacaagtaattagt |
288 |
Q |
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| T |
32372597 |
tataattaaggttgtttaatgttctctatcacgtttcttaatacaagtaattagt |
32372543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 32372681 - 32372623
Alignment:
| Q |
174 |
ttctattatatgatcattcattttttcggttagtttcttaattatggttttagaaattgtt |
234 |
Q |
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| T |
32372681 |
ttctattatatgatcattcat-ttttcggttagtttcttaatt-tggttttagaaattgtt |
32372623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 32372792 - 32372758
Alignment:
| Q |
23 |
acgtatgcctcactcactttactatatcttctgca |
57 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
32372792 |
acgtatgcttcactcactttactatatcttctgca |
32372758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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