View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_20 (Length: 359)
Name: NF1619_low_20
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 175 - 351
Target Start/End: Complemental strand, 4547129 - 4546953
Alignment:
| Q |
175 |
acttggactggacaaatttaatagattagtggtagataataaaaagtaagtaacagtacaccttagtatgaaagggttcgagaagagtaacaacagtaac |
274 |
Q |
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| T |
4547129 |
acttggactggagaaatttaatagattagtggtagataataaaaagtaagtagcagtagaccttagtatgaaagggttcgagaagagtaacaacagtaac |
4547030 |
T |
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| Q |
275 |
aagagaagggtctaatccaatctcctcctttgcttctctcaaagcagtttcaatatcatcagcatcactttcatctc |
351 |
Q |
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| T |
4547029 |
aagagaagggtctaatccaatctcctcctttgcttctctcaaagcagtttcaatatcatcagcatcactttcatctc |
4546953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 4547368 - 4547305
Alignment:
| Q |
18 |
gtttgcaaaattaatgaactaaaaatctagatcgccaaaagattagtatacgaaatctctatct |
81 |
Q |
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| T |
4547368 |
gtttgcaaaattaatgaaataaaaatctagatcgccaaaagattagtatacgacatctctatct |
4547305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 4547188 - 4547158
Alignment:
| Q |
113 |
tcgaatgtgttttccctttgttggtttggtc |
143 |
Q |
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| T |
4547188 |
tcgaatgtgttttccctttgttggtttggtc |
4547158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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