View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_22 (Length: 351)
Name: NF1619_low_22
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 34623340 - 34623006
Alignment:
| Q |
1 |
aatccacgagggaacaaatgtttgttgtgattacactgcagatatggaataaataacaaagatgaaatactaaccaatattgagctcagaggcaaagatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34623340 |
aatccacgagggaacaaatgtttgctgtgattacactgcagatatggaataaataacaaagatgaaatactaaccaatattgagctcagaggcaaagatg |
34623241 |
T |
|
| Q |
101 |
tctctaatgttgtcctcataagaacctctgattgtacagaagataaatccacattaaacaaagaacaacacaaatcagaaagacaattgaaacaagctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34623240 |
tctctaatgttgtcctcataagaacctctgattgtacagaagataaatccacattaaacaaagaacaacacaaatcagaaagacaattgaaacaagctaa |
34623141 |
T |
|
| Q |
201 |
actaaatataagtatgtttaatttggtctgtttggattggcggtgaaattggcagaatcacagcgagagatcgtgattttcctaaaagctatggtttgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34623140 |
actaaatataagtatgtttaatttggtctgtttggattggcggtgaaattggcagaatcacagcgagagatcgtgattttcctaaaagctatggtttgga |
34623041 |
T |
|
| Q |
301 |
gcatcacaaaacaccaccttgattttaacggattc |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
34623040 |
gcatcacaaaacaccaccttgattttaacggattc |
34623006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 328
Target Start/End: Complemental strand, 34739584 - 34739288
Alignment:
| Q |
33 |
acactgcagatatggaataaataacaaagatg-aaatactaaccaatattgagctcagaggcaaagatgtctctaatgttgtcctcataagaacctctga |
131 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34739584 |
acactgcagatatggaataaataacaaggatggaaatactaaccaatattgagttcagaggcaaagatgtctccaatgttgtcctcataagaacctctga |
34739485 |
T |
|
| Q |
132 |
ttgtacagaagataaatccacattaaacaaagaacaacacaaatcagaaagacaattgaaacaagctaaactaaatataagtatgtttaatttggtctgt |
231 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| |||||||||| ||||||||||| |
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|
| T |
34739484 |
ttgtacaaaagataaatccacatttaacaaagaacaacacaaatgagaaacacaattcaaacaagctaaacaaaataaaagtatgtttgatttggtctgt |
34739385 |
T |
|
| Q |
232 |
ttggattggcggtgaaattggcagaatcacagcgagagatcgtgattttcctaaaagctatggtttggagcatcacaaaacaccaccttgattttaa |
328 |
Q |
| |
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||| ||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
34739384 |
ttgaattggcggtgaaattggcagactcaccgcgagtcatcgtgattttgctaaaagctatactttggagcatcacaaaacaccaccgtgattttaa |
34739288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 34595589 - 34595269
Alignment:
| Q |
16 |
aaatgtttgttgtgattacactgcagatatggaataaataacaaagatgaaatactaaccaatattgagctcagaggcaaagatgtctctaatgttgtcc |
115 |
Q |
| |
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|||||| || |||||||| | ||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34595589 |
aaatgtatggtgtgattaaaatgcagatatggaataaaaaacaaggatgaaatactaaccagtattgagttcagaggcaaagatgtctctaatgttgtcc |
34595490 |
T |
|
| Q |
116 |
tcataagaacctctgattgtacagaagataaatccac-------attaaacaaagaacaacacaaatcagaaagacaattgaaacaagctaaactaaata |
208 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
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|
| T |
34595489 |
tcataagaacctctgattgtacaaaagataaatccacgttaaacattaaacaaagaacaacacagatgagaaacacaattgaaacaagctaaactaaata |
34595390 |
T |
|
| Q |
209 |
taagtatgtttaatttggtctgtttggattggcggtgaaattggcagaatcacagcgagagatcgtgattttcctaaaagctatggtttggagcatcaca |
308 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
34595389 |
taagtatgtttaatttggtctgttcgaattggcggtgaaattggcagaatcaccgtgagtcatcgtgattttgctaaaagctatactttggagcatcaca |
34595290 |
T |
|
| Q |
309 |
aaacaccaccttgattttaac |
329 |
Q |
| |
|
||||| |||| | |||||||| |
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|
| T |
34595289 |
aaacatcaccgtaattttaac |
34595269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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