View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_27 (Length: 302)
Name: NF1619_low_27
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 28938772 - 28939016
Alignment:
| Q |
28 |
agaaaataagatgcaatgaatgatgttagtacctgaaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28938772 |
agaaaataagatgcaatgaatgatgttagtacctgaaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttc |
28938871 |
T |
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| Q |
128 |
atttcttcttttgttgttccttttccccatttctgttctgggtaagaaataaaaatgagaggtttttaaaaaagcttcaactcaagtatgtaatgttgat |
227 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28938872 |
ctttcttcttttgttgttccttttccccatttttgttctgggtaagaaataaaaatgagaggtttttaaaaaagcttcaactcaagtatgt--------- |
28938962 |
T |
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| Q |
228 |
gaagagtagtagtagctgaagaaatgcagaacgagagaaaatagcagtcaccgataata |
286 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
28938963 |
-----gtagtagtagctgaagaaaagcagaatgagagaaaatagcagtcaccgataata |
28939016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 28905467 - 28905667
Alignment:
| Q |
63 |
aaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttcatttcttcttttgttgttccttttccccatttctg |
162 |
Q |
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| T |
28905467 |
aaatcacagactctcatttcaccaccatctttgcaaacaaagcaataatcttcagcaatctcttccttttttcttttgttgttctttttcaccatttttg |
28905566 |
T |
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| Q |
163 |
ttct-----------------gggtaagaaataaaaatgagaggtttttaaaaaagcttcaactcaagtatgtaatgttgatgaagagtagtagtagctg |
245 |
Q |
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|||| ||||||||||||||||| |||| |||||| |||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
28905567 |
ttctggagaagaaagaaaggggggtaagaaataaaaataagagctttttataaaagcttcaactcaagt-----aggttgatgaagagtagtagtagctg |
28905661 |
T |
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| Q |
246 |
aagaaa |
251 |
Q |
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|||||| |
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| T |
28905662 |
aagaaa |
28905667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 28895064 - 28895177
Alignment:
| Q |
46 |
aatgatgttagtacctgaaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttcatttcttcttttgttgtt |
145 |
Q |
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||||| |||||||||| |||||||||| ||||| ||||||||||||||||| | ||||||| || ||||| || ||||| ||| ||||||||||||| |
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| T |
28895064 |
aatgaagttagtacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgtt |
28895163 |
T |
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| Q |
146 |
ccttttccccattt |
159 |
Q |
| |
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| || ||||||||| |
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| T |
28895164 |
ctttctccccattt |
28895177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 28928217 - 28928317
Alignment:
| Q |
57 |
tacctgaaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttcatttcttcttttgttgttccttttcccca |
156 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| | |||||| | ||||||| ||| ||||| ||| |||||||||| ||| |||| |||| |
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| T |
28928217 |
tacctgaaatcacatactctcagttcaccaccatctttgcaaacaaagcaccattcttcagcgatctcttccttttttcttttgttattcttttttccca |
28928316 |
T |
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| Q |
157 |
t |
157 |
Q |
| |
|
| |
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|
| T |
28928317 |
t |
28928317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 28918473 - 28918568
Alignment:
| Q |
64 |
aatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcagagatttcttcatttcttcttttgttgttccttttccccattt |
159 |
Q |
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|||||||||| |||| || ||||||||||||||| |||||||| || |||||| || ||||| || |||||||||| ||| ||||| |||||| |
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| T |
28918473 |
aatcacagaccctcatttgaccaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcaccattt |
28918568 |
T |
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