View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1619_low_34 (Length: 276)

Name: NF1619_low_34
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1619_low_34
NF1619_low_34
[»] chr5 (2 HSPs)
chr5 (1-237)||(28384979-28385215)
chr5 (1-236)||(12540331-12540566)
[»] chr7 (1 HSPs)
chr7 (1-181)||(3417825-3418005)
[»] chr2 (3 HSPs)
chr2 (1-222)||(13439859-13440081)
chr2 (1-162)||(13448083-13448244)
chr2 (1-237)||(13454478-13454715)
[»] chr4 (5 HSPs)
chr4 (1-179)||(48960994-48961172)
chr4 (4-128)||(48957898-48958022)
chr4 (1-167)||(48965044-48965210)
chr4 (1-163)||(48967177-48967339)
chr4 (17-117)||(48912659-48912759)
[»] chr8 (1 HSPs)
chr8 (1-181)||(12641779-12641959)
[»] chr6 (1 HSPs)
chr6 (2-129)||(12590468-12590595)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28385215 - 28384979
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385215 gagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 28385116  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgag 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385115 aaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgag 28385016  T
Q  201 ttttttgaacttatcctaataacgtcgttgtttcgtc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  28385015 ttttttgaacttatcctaataacgtcgttgtttcgtc 28384979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12540566 - 12540331
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| |||||| |||||| | ||||||||||||| |||||||||| |||    
T  12540566 gagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaag 12540467  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgag 200  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||| ||||||||||||| ||| || ||| | ||| |    
T  12540466 aaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaaggagtattgcatgtg 12540367  T
Q  201 ttttttgaacttatcctaataacgtcgttgtttcgt 236  Q
    |||| |||| ||||||||||||||||||||||||||    
T  12540366 ttttctgaatttatcctaataacgtcgttgtttcgt 12540331  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 3417825 - 3418005
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    |||||||| |||||||||||||||||| || | ||||| ||||||  |||||||| ||||||||||||| | ||||||||||||| ||||||| || |||    
T  3417825 gagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaag 3417924  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 181  Q
    ||||||||||||| ||| ||||||||||| |||| ||||||||||||||||  ||||||||| |||| |||| ||||||||    
T  3417925 aaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgattaat 3418005  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13440081 - 13439859
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| ||||||||||||||||   ||| ||||||||| || ||||||| | || ||||| |||||| ||||| |||||||||| |||| || |||    
T  13440081 gagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaag 13439982  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tcaaatgaatatggtatga 199  Q
    ||||||| || ||| ||||||||||||| |||||||| || |||||||||||||||||||||  ||| | |||||||||| ||||| || ||| || |      
T  13439981 aaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctat 13439882  T
Q  200 gttttttgaacttatcctaataa 222  Q
    ||||||| ||| |||||||||||    
T  13439881 gttttttcaacctatcctaataa 13439859  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 13448244 - 13448083
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| | |||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||| ||||| || |||| || |||| || |||    
T  13448244 gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaag 13448145  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac 162  Q
    ||||||| || ||| ||||||||||||| ||||| || |||||||||||||||| |||||||    
T  13448144 aaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 13448083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13454715 - 13454478
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| ||||||||||||||| |||||| ||||||||| || |||| ||   ||||||||||||||| ||||| |||||||||| |||| || ||     
T  13454715 gagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaa 13454616  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tcaaatgaatatggtatga 199  Q
    ||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||| ||  ||| || ||||||||| ||||| ||  || || | |    
T  13454615 aaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaa 13454516  T
Q  200 gttttttgaacttatcctaataacgtcgttgtttcgtc 237  Q
    ||||||| ||||| | |||||||| | |||||||||||    
T  13454515 gttttttcaactttttctaataacattgttgtttcgtc 13454478  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 48961172 - 48960994
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||  |||| | ||| ||||||||||| |||||||| ||| |||| ||||  |||||||||||||| || || ||||||| | |||||||| |||    
T  48961172 gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag 48961073  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta 179  Q
     ||| || || ||||||||||||||||| |||||||| || || |||||||||||||||||||| || |||| ||||||    
T  48961072 taggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta 48960994  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 48958022 - 48957898
Alignment:
Q  4 aaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaag 103  Q
    |||||| ||| |||||||||||||||||| |||||||||||  | || | ||| ||||||| |||||| ||||| |||||||||||||||||| ||||||    
T  48958022 aaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaag 48957923  T
Q  104 gtggttcctctcataataatttgtt 128  Q
    |||| || |||||||| ||||||||    
T  48957922 gtggatcatctcataacaatttgtt 48957898  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 48965210 - 48965044
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||  | || |||   ||||||| |||||| ||||| ||||||| ||||||  || |||    
T  48965210 gagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaag 48965111  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaa 167  Q
    ||||||| || |||||||| ||||||||||| || || || || || |||||||||||||| |||||    
T  48965110 aaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaa 48965044  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 48967339 - 48967177
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||| ||||| || ||||||||||||  || ||||||||||||  | || ||||||||||||||||| || ||||| ||||||||||||||  || |||    
T  48967339 gagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaag 48967240  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagaca 163  Q
    ||||||| |  ||| ||||||||||  | ||||| || || || ||||||||| |||||||||    
T  48967239 aaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagaca 48967177  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 48912659 - 48912759
Alignment:
Q  17 gattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttcctctca 116  Q
    ||||||||||| |||| |||||||||||  | || ||||||| |||||||||||| || ||||| |||| ||  ||  |||||||||||||||| |||||    
T  48912659 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttcatctca 48912758  T
Q  117 t 117  Q
    |    
T  48912759 t 48912759  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 12641779 - 12641959
Alignment:
Q  1 gagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag 100  Q
    ||||| ||| |||||||||||||||||| ||| ||||||||| |  | || ||||||||||||| |||||| ||  | ||||||||||  |||||| |||    
T  12641779 gagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttgaag 12641878  T
Q  101 aaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat 181  Q
    |||| || || |||||||| |||||||| ||||| ||  |||| |||||||||| ||||||| ||||||||| ||| ||||    
T  12641879 aaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttgaataat 12641959  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 12590468 - 12590595
Alignment:
Q  2 agaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaaga 101  Q
    |||| ||| |||| ||||||||||| ||||||  |||||||||  | || |||| ||||  || ||||||||| || || |||| || ||||||| || |    
T  12590468 agaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagactagctgttcaaca 12590567  T
Q  102 aggtggttcctctcataataatttgtta 129  Q
    |||||| |||||| ||||||||||||||    
T  12590568 aggtggctcctctaataataatttgtta 12590595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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