View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_36 (Length: 271)
Name: NF1619_low_36
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18840807 - 18841068
Alignment:
| Q |
1 |
aaaagttatataaattaacatcaagtaaaatcaaaggaaataagaacaacaaaggtacaaacccaatgataaggagggtgatca---ggagtgtggaagt |
97 |
Q |
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| T |
18840807 |
aaaagttatataaattatcatcaagtaaaatcaaagaaaataagaacaacaaaggtacaaacccaatgataaggagggtgatcatcaggagtgtggaagt |
18840906 |
T |
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| Q |
98 |
cattgaaaagttgtggaagacgctcgtcaagaaaagaggagaggtttggagagttgatgatggagctagaactagggttcattgccgcatatcgaagcaa |
197 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||| |
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| T |
18840907 |
cattgaaaagttgtggtagacgctcgtcaagaaaagaggagaggtttggagagttgatgatggagctagaacttgggtccattcccgcataacgaagcaa |
18841006 |
T |
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| Q |
198 |
aaaagatttcttcaacttttccattacaaccttattcctttgatcttgcatcattgttttca |
259 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18841007 |
gaaagatttcttcaacttttccattacaacctccttcctttgatcttgcatcattgttttca |
18841068 |
T |
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