View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_37 (Length: 271)
Name: NF1619_low_37
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27105532 - 27105795
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
100 |
Q |
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| T |
27105532 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
27105631 |
T |
|
| Q |
101 |
ttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
200 |
Q |
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| T |
27105632 |
ttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
27105731 |
T |
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| Q |
201 |
agggctttctggaaatggttgtttagttattgatccaataagtctccctctttcccacacaggt |
264 |
Q |
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| T |
27105732 |
agggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggt |
27105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27098533 - 27098796
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
27098533 |
tttaaggctcttgctcttgatctccaaacataacctgcaattgattcaaaagttgtgaaccttatatttccactttccttcatcaagctcaacttaagcc |
27098632 |
T |
|
| Q |
101 |
ttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
200 |
Q |
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| T |
27098633 |
ttgttatcatttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
27098732 |
T |
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| Q |
201 |
agggctttctggaaatggttgtttagttattgatccaataagtctccctctttcccacacaggt |
264 |
Q |
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| T |
27098733 |
agggctttctggaaatggttgttcagttattgatccaataagtctctctctttcccacacaggt |
27098796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27062744 - 27062975
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
27062744 |
tttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatat------tttcgttcatcaaactcaacttaagtc |
27062837 |
T |
|
| Q |
101 |
ttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
200 |
Q |
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| T |
27062838 |
ttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccat |
27062937 |
T |
|
| Q |
201 |
agggctttctggaaatggttgtttagttattgatccaa |
238 |
Q |
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|||| || ||||||||||||| ||||||||| ||||| |
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| T |
27062938 |
ggggcattgtggaaatggttgtgtagttattgttccaa |
27062975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 27069811 - 27070075
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||| ||| | |||||| |||||||||||||||||||| |
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| T |
27069811 |
tttaaggctcttgctcttgacctccacacataacctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtc |
27069910 |
T |
|
| Q |
101 |
ttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
200 |
Q |
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| T |
27069911 |
ttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaaatgcaacagattttctgtccat |
27070010 |
T |
|
| Q |
201 |
agggctttctggaaatggttgtttagttattgatccaataagtctccctctttcccacacaggtt |
265 |
Q |
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|| | || |||||| |||||| ||| ||||||||||| || | |||||||||||||||||| |
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| T |
27070011 |
gggacattgtggaaaaggttgtatagctattgatccaacttgtgtttctctttcccacacaggtt |
27070075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 27085867 - 27086131
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| | || |||| |||||||||||||||||||| |
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| T |
27085867 |
tttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtc |
27085966 |
T |
|
| Q |
101 |
ttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcat |
200 |
Q |
| |
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|| ||| |||||||||||| || ||||||||||||| || || | ||||| || | |||||| | ||| ||||||| || ||||||||| || ||| |
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| T |
27085967 |
ttcttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtccat |
27086066 |
T |
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| Q |
201 |
agggctttctggaaatggttgtttagttattgatccaataagtctccctctttcccacacaggtt |
265 |
Q |
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|| | || |||||| | |||| ||| ||||||||||| || | |||||||||||||||||| |
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| T |
27086067 |
gggacattgtggaaaagtttgtatagctattgatccaacttgtttttctctttcccacacaggtt |
27086131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 27041389 - 27041524
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| || | || ||| |||||||||||||| ||||| |
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| T |
27041389 |
tttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcattttttcatttttattcatcaaactcaatttaagtc |
27041488 |
T |
|
| Q |
101 |
ttgttaacatttcaccctccacattaaaacaatatt |
136 |
Q |
| |
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||||| |||||||||||| || ||||||||||||| |
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| T |
27041489 |
ctgttatcatttcaccctctactttaaaacaatatt |
27041524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27056702 - 27056765
Alignment:
| Q |
1 |
tttaaggctcttgctcttgatctccacacataacctgcaattgattaaaaagttgtgaaccttat |
65 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||| | | | |||||||||||||||||| |
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| T |
27056702 |
tttaaggctcttgctcttgacctctacacataacctgcaagt-actcaaaagttgtgaaccttat |
27056765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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