View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_4 (Length: 658)
Name: NF1619_low_4
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Original strand, 1938073 - 1938527
Alignment:
| Q |
7 |
gtgagatgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaaggtttgtaaccaagtttagtattttgtgcacaatattat |
106 |
Q |
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| T |
1938073 |
gtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaaggtttgtaaccaagtttagtattttgtgcacaatattat |
1938172 |
T |
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| Q |
107 |
cattttgcttcttctcacattggattcaatcatcacactgttttctgagactcttagtgtgactttaggtaatactatttcatcactgaatctataacta |
206 |
Q |
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| T |
1938173 |
cattttgcttcttctcacattggattcaatcatcacactgttttctgagactcttagtgtgactttaggtaatactatttcatcactgaatctataacta |
1938272 |
T |
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| Q |
207 |
gccaagtttgatccacaagtggtcgagtcatgtagtttcttttttaccattgttgaatatgcaatagttatgttttccttttgaatttctagttctctta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1938273 |
gccaagtttgatccacaagtggtcgagtcatgtagtttcttttttaccattgttgaatatgcaatagttatgttttccttttgaatttctagttctctta |
1938372 |
T |
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| Q |
307 |
cacgttcttgaagttgattcacataattgattgtttcttgaagtatataagacttttctgcttgtacatataaagagatgtattaatagcagacaataat |
406 |
Q |
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| T |
1938373 |
cacgttcttgaagttgattcacataattgattgtttcttgaagtatataagacttttctgcttgtacatataaagagatgtattaatagcagacaataat |
1938472 |
T |
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| Q |
407 |
tcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac |
461 |
Q |
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| T |
1938473 |
tcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac |
1938527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 173 - 461
Target Start/End: Original strand, 23751867 - 23752138
Alignment:
| Q |
173 |
aggtaatactatttcatcactgaatctataactagccaagtttgatccacaagtggtc-gagtcatgtagtttcttttttaccattgttgaatatgcaat |
271 |
Q |
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| T |
23751867 |
aggtagtactatttcatcactgaatctataactagccaagtttgattcacaagtggtctgagtcgtgtagtttcttttttaccattgttgaatatgcaat |
23751966 |
T |
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| Q |
272 |
agttatgttttccttttgaatttctagttctcttacacgttcttgaagttgattcacataattgattgtttcttgaagtatataagacttttctgcttgt |
371 |
Q |
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| T |
23751967 |
agttatgttttcattttgaatttctagttctcttacacgtt-tttaagttgattcacataattgattgcttcttgaagtatataagaattttctgtctgt |
23752065 |
T |
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| Q |
372 |
acatataaagagatgtattaatagcagacaataattcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac |
461 |
Q |
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| T |
23752066 |
agatataaagagatat-----------------attcaagacacaaagtttagggtttaaaataccaactatgtacaaatatgtaacaac |
23752138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 544 - 643
Target Start/End: Original strand, 1938610 - 1938709
Alignment:
| Q |
544 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatacttacaagcattgtcgtgatttagaagtattatct |
643 |
Q |
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| T |
1938610 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatacttacaagcattgtcgtgatttagaagtattatct |
1938709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 23752221 - 23752286
Alignment:
| Q |
544 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatac |
609 |
Q |
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| T |
23752221 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccagtccaacatac |
23752286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 1985423 - 1985464
Alignment:
| Q |
311 |
ttcttgaagttgattcacataattgattgtttcttgaagtat |
352 |
Q |
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| T |
1985423 |
ttcttgaagttgtttcacataattgatagcttcttgaagtat |
1985464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 20010073 - 20010014
Alignment:
| Q |
299 |
ttctcttacacgttcttgaagttgattcacataattgattgtttcttgaagtatataaga |
358 |
Q |
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| T |
20010073 |
ttctcttacacactcttgaagttggttcacataagtgattgcttcttaaagtatataaga |
20010014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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