View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_40 (Length: 252)
Name: NF1619_low_40
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36471882 - 36471649
Alignment:
| Q |
1 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagcatcaattatcattttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36471882 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagcatcaattatcattttc |
36471783 |
T |
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| Q |
101 |
atcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaagttatgcgttttgcattcatatatagattaagatgagatgacttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
36471782 |
atcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaagttgtgtgttttgcatttatatatagattaagatgagatgacttaa |
36471683 |
T |
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| Q |
201 |
cttcnnnnnnncccttcaaattacaggtggaaca |
234 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
36471682 |
cttctttttttcccttcaaattacaggtggaaca |
36471649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 36462655 - 36462502
Alignment:
| Q |
1 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagcatcaattatcattttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
36462655 |
tctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgtcttattagggagagcatcaattatcattttc |
36462556 |
T |
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| Q |
101 |
atcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaa |
154 |
Q |
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| T |
36462555 |
atcttagccctcacagtttttgtgagtggaatatcactaggtaagtgtcgttaa |
36462502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 34070747 - 34070801
Alignment:
| Q |
54 |
tgagaaagcttattgccttattaggaagagcatcaattatcattttcatcctagc |
108 |
Q |
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||||||| ||||||||||||| ||| | ||| || |||||||||||||||||||| |
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| T |
34070747 |
tgagaaaacttattgccttatcaggtaaagcttcgattatcattttcatcctagc |
34070801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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