View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_41 (Length: 251)
Name: NF1619_low_41
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 53130913 - 53131006
Alignment:
| Q |
139 |
agagagatccttctagggttttctacgagactttacatgaacaaattcccactagtgaaatggcacaaatctggtgagttctcaacggcctatt |
232 |
Q |
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| T |
53130913 |
agagagatccttctagggttttctacgagactttacatgaacaaattcccactagcgaaatggcacaaatctggtgaattctcaacggcctatt |
53131006 |
T |
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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 53130775 - 53130844
Alignment:
| Q |
1 |
agtaaagaaggtttatgatttacctggacaaaaacgtgatccacctgaagaggtttgcataacaatgcac |
70 |
Q |
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| T |
53130775 |
agtaaagaaggtttatgatttacctggacaaaaacgtgatccacctgaagaggtttgcataacaatgcac |
53130844 |
T |
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