View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1619_low_43 (Length: 249)
Name: NF1619_low_43
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34406295 - 34406531
Alignment:
| Q |
1 |
catgggtgcatacaaaatcaccttttcattttctatcctctatttcattttgtacaccctcctccttccatgtgaatgtgaattttcaccaaaattagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34406295 |
catgggtgcatacaaaatcaccttttcattttctatcctctatttcactttgtacaccctcctccttccatgtgaatgtgaattttcaccaaaattagac |
34406394 |
T |
|
| Q |
101 |
tcgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34406395 |
ccgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
34406494 |
T |
|
| Q |
201 |
aagttcacagatctccaatcttcaaaatggttccctt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34406495 |
aagttcacagatctccaatcttcaaaatggttccctt |
34406531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 51608596 - 51608832
Alignment:
| Q |
1 |
catgggtgcatacaaaatcaccttttcattttctatcctctatttcattttgtacaccctcctccttccatgtgaatgtgaattttcaccaaaattagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51608596 |
catgggtgcatacaaaatcaccttttcattttctatcccctatttcactttgtacaccctcctccttccatgtgaatgtgaattttcaccaaaattagac |
51608695 |
T |
|
| Q |
101 |
tcgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51608696 |
ccgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
51608795 |
T |
|
| Q |
201 |
aagttcacagatctccaatcttcaaaatggttccctt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51608796 |
aagttcacagatctccaatcttcaaaatggttccctt |
51608832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46135546 - 46135782
Alignment:
| Q |
1 |
catgggtgcatacaaaatcaccttttcattttctatcctctatttcattttgtacaccctcctccttccatgtgaatgtgaattttcaccaaaattagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46135546 |
catgggtgcatacaaaatcaccttttcattttctatcccctatttcactttgtacaccctcctccttccatgtgaaggtgaattttcaccaaaattagac |
46135645 |
T |
|
| Q |
101 |
tcgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46135646 |
ccgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
46135745 |
T |
|
| Q |
201 |
aagttcacagatctccaatcttcaaaatggttccctt |
237 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46135746 |
aagttcacaaatctccaatcttcaaaatggttccctt |
46135782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41449907 - 41450143
Alignment:
| Q |
1 |
catgggtgcatacaaaatcaccttttcattttctatcctctatttcattttgtacaccctcctccttccatgtgaatgtgaattttcaccaaaattagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
41449907 |
catgggtgcatacaaaatcaccttttcattttctatcccctatttcactttgtacaccctcctccctccatgtgaaggtgaattttcaccaaaattagac |
41450006 |
T |
|
| Q |
101 |
tcgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450007 |
ccgtgaaaccactatctttcatctttctaagcataacagtagaaacaacctcgacacagagaaagtaacaagaggcataagatgaagaagaatcactatg |
41450106 |
T |
|
| Q |
201 |
aagttcacagatctccaatcttcaaaatggttccctt |
237 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41450107 |
aagttcacaaatctccaatcttcaaaatggttccctt |
41450143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University