View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_48 (Length: 241)
Name: NF1619_low_48
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 43035424 - 43035634
Alignment:
| Q |
13 |
gaagaatatgaagacatatcaattgatnnnnnnnntacaaacttgttttctctattactatttacttgcaaatgcaataatattgtggttcttgtattgg |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43035424 |
gaagaatatgaagacatatcaattgataaaaaaaatacaaacttgttttctctattactatttacttgcaaatgcgataatattgtggttcttgtattgg |
43035523 |
T |
|
| Q |
113 |
aatgcagtgaatgatgggatgagccgaagagcagtacacaaagcaatctttgaatcagcagcactgattggagctagtgcactgcaagtttatcttctgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43035524 |
aatgcagtgaatgatgggatgagccgaagagcagtacacaaagcaatctttgaatcagcagcactgattggagctagtgcactgcaagtttatcttctgc |
43035623 |
T |
|
| Q |
213 |
gacgcttgttt |
223 |
Q |
| |
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||||||||||| |
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| T |
43035624 |
gacgcttgttt |
43035634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 741435 - 741225
Alignment:
| Q |
13 |
gaagaatatgaagacatatcaattgatnnnnnnnntacaaacttgttttctctattactatttacttgcaaatgcaataatattgtggttcttgtattgg |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
741435 |
gaagaatatgaagacatatcaattgataaaaaaaatacaaacttgttttctctattactatttacttgcaaatgcgataatattgtggttcttgtattgg |
741336 |
T |
|
| Q |
113 |
aatgcagtgaatgatgggatgagccgaagagcagtacacaaagcaatctttgaatcagcagcactgattggagctagtgcactgcaagtttatcttctgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
741335 |
aatgcagtgaatgatgggatgagccgaagagcagtacacaaagcaatctttgaatcagcagcactgattggagctagtgcactgcaagtttatcttctgc |
741236 |
T |
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| Q |
213 |
gacgcttgttt |
223 |
Q |
| |
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||||||||||| |
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| T |
741235 |
gacgcttgttt |
741225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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