View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_53 (Length: 236)
Name: NF1619_low_53
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 34943204 - 34943363
Alignment:
| Q |
63 |
aagactatggaagttattattcacatcttttattacttttgaaagatgttaattaaagaaatattttgatggagagactaaattaattaactctctttaa |
162 |
Q |
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| T |
34943204 |
aagactatggaagttattattcacatcttttattacttttcaaagatgttaattaaagaaatattttgatggagggactaaattaattaactctctttaa |
34943303 |
T |
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| Q |
163 |
tttaaggaattaatttgctattttgtgatttgaaggactaaatggttggatcctaatttc |
222 |
Q |
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| T |
34943304 |
tttaaggaattaatttgctattttgtgatttgaaggactaaatggttggatcctaatttc |
34943363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34943144 - 34943180
Alignment:
| Q |
1 |
tatatattaaccttgacgtaccaagagactatttaag |
37 |
Q |
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| T |
34943144 |
tatatattaaccttgacgtaccatgagactatttaag |
34943180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 14013943 - 14013865
Alignment:
| Q |
107 |
gatgttaattaaagaaatattttgatggagagactaaattaattaactctctttaatttaaggaattaatttgctattt |
185 |
Q |
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| T |
14013943 |
gatgtttactaaagaaatattttgatagagggactaaattgattggtgttctttaatttaagggattattttgctattt |
14013865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 41513943 - 41513825
Alignment:
| Q |
88 |
tcttttattacttttgaaagatgttaattaaagaaatattttgatggagagactaaattaattaactctctttaatttaaggaattaatttgctattttg |
187 |
Q |
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| T |
41513943 |
tcttttattagttttgataaatgtttgctaaagaaatattttgatggagagactaaattgattgatatttttcaatttaagggactaacttgctattttg |
41513844 |
T |
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| Q |
188 |
-tgatttgaaggactaaat |
205 |
Q |
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| T |
41513843 |
caaatttgaaggactaaat |
41513825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 34726704 - 34726771
Alignment:
| Q |
118 |
aagaaatattttgatggagagactaaattaattaactctctttaatttaaggaattaatttgctatttt |
186 |
Q |
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| T |
34726704 |
aagaaatattttgatggagggactaaattaattatat-tctttaatttaaaggactaatttgctatttt |
34726771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 34428200 - 34428116
Alignment:
| Q |
99 |
ttttgaaagatgttaattaaagaaatattttgatggagagactaaattaattaactctctttaatttaaggaattaatttgctat |
183 |
Q |
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| T |
34428200 |
ttttgatagatgtttatgaatgagatattttgatggagggactaaattgattgaggctctttaatttaaaggattaatttgctat |
34428116 |
T |
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