View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_54 (Length: 236)
Name: NF1619_low_54
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 36359358 - 36359562
Alignment:
| Q |
13 |
gtgagatgaattccgtcggtgttaggactattccctggtgatgacactttgagaccagaagctttaacattagtcgaatcctggaatgaaacgtggattt |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36359358 |
gtgatatgaattccgtcggtgttaggactattccctggtgatgacactttgagaccagaagctttaacattagtcgaatcctggaatgaaacgtgaattt |
36359457 |
T |
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| Q |
113 |
gttgtgcattttgtattgtcaaatcctcaactattaagtccttgcaactatcaaatgttagagcctataaaaataaagttagttaattaacaagtatatc |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
36359458 |
gttgcgcattttgtattgtcaaatcctcaactattaagtccttgcaactatcaaatgttagagcctacaaaaataaatttagttaattaacaagtatatc |
36359557 |
T |
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| Q |
213 |
caatt |
217 |
Q |
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||||| |
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| T |
36359558 |
caatt |
36359562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 36348078 - 36348274
Alignment:
| Q |
13 |
gtgagatgaattccgtcggtgttaggactattccctggtgatgacactttgagaccagaagctttaacattagtcgaatcctggaatgaaacgtggattt |
112 |
Q |
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|||| ||||||||| |||||||||||||||| | | ||||||| ||| | |||||||||||| |||||||| |||||||| ||||||| ||||||| |
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| T |
36348078 |
gtgacatgaattccatcggtgttaggactatcctccggtgatgccacaatcagaccagaagctgtaacattaactgaatcctgaaatgaaatatggattt |
36348177 |
T |
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| Q |
113 |
gttgtgcattttgtattgtcaaatcctcaactattaagtccttgcaactatcaaatgttagagcctataaaaataaagttagttaattaacaagtat |
209 |
Q |
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|||| |||||| |||| |||||| ||||||||| ||||||| |||| || |||| || |||||||| ||||| |||||||||||||||||| |||| |
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| T |
36348178 |
gttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacgtcagagcctacaaaaacaaagttagttaattaacacgtat |
36348274 |
T |
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