View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1619_low_56 (Length: 224)
Name: NF1619_low_56
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 3605760 - 3605942
Alignment:
| Q |
19 |
caaaacacaagaaaaaccaaatcttttgtgaaagaatgtttgacaaagataactgataaatcctccttccatacatatcccaaagaatgtttgacaaaaa |
118 |
Q |
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| T |
3605760 |
caaaacacaagaaaagccaaatcttt-gtgaaagaatgtttgacaaagataactgataaatcctccttccatacatatcctaaagaatgtttgacaaaaa |
3605858 |
T |
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| Q |
119 |
taaccgataaattagttgaagaaaattgttccatagggtggtggcaatctaaaccaagttgctacctagccatggtatcaccgcac |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3605859 |
taaccgat--attagttgaagaaaattgttccatagggtggtggcaatctaaaccaagttgctacttagccatggtatcaccgcac |
3605942 |
T |
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