View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1619_low_7 (Length: 609)
Name: NF1619_low_7
Description: NF1619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1619_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 29956403 - 29956992
Alignment:
| Q |
1 |
atctgcgactgcaatttaaaaacattgctttccacgaatgaaaacgaagggaaaaaatgctcaccaattccttccaataacctccttagaagagtaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29956403 |
atctgcgactgcaatttaaaaacattgctttctacgaatgaaaacgaagggaaaaaatgctcaccaattccttccaataacctccttagaagagtaacca |
29956502 |
T |
|
| Q |
101 |
gtcatactnnnnnnnccactgcttgcatacaagataggacaatcaggtttagttgcatctgagacaacaaatgtttgctgaagtgtagacaacgcgtcct |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29956503 |
gtcatactaaaaaaaccactgcttgcatacaagataggacaatcaggtttagttgcatctgagacaacaaatgtttgttgaagtgtagacaacgcgtcct |
29956602 |
T |
|
| Q |
201 |
tcaattcttgtgaaactcttggaaacaaccccgacaatttagcctccgaaccataattcgattcccctgaagtccttgtcgaatcagcaaacctatctga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29956603 |
tcaattcttgcgaaactcttggaaacagccccgacaatttagcctccgaaccataattcgattcccctgaagtccttgtcgaatcagcaaacctatctga |
29956702 |
T |
|
| Q |
301 |
catgcctttgctcttatcaccatccaatgaagaagaacttgtctcaactgctgctaccaaattgcctgagtttaccactagtccccattccgcagctctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29956703 |
catgcctttgctcttatcaccatccaatgaagaagaacttgtctcaactgctgctaccaaattgcctgagtttaccactagtccccattccgcagctctc |
29956802 |
T |
|
| Q |
401 |
tcggctatacttgcttcggttagaatttgatcattatcaccagaaggagcctttgttgatgttgagttttcatctggtttgttagcaaatgccatccatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29956803 |
tcggctatacttgcttcggttagaatttgatcattatcaccagaaggagcctttgttgatgttgagttttcatctggtttgttagcaaatgccatccatt |
29956902 |
T |
|
| Q |
501 |
tgttcacagattctttactggttccagaattagccgatgattcctttttctccatctatgaattagttgaatatctatcaactatgacct |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29956903 |
tgttcacagattctttactggttccagaattagctgatgattcctttttctccatctatgaattagtctaatatctatcaactatgacct |
29956992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University