View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16200_low_1 (Length: 550)
Name: NF16200_low_1
Description: NF16200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16200_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 247 - 532
Target Start/End: Original strand, 56483802 - 56484087
Alignment:
| Q |
247 |
gcaggtccataacctgtttaatttcatgccacatgtccttcgccgagataccctcgtaagaaccagatataacaaagacagggcattctgagacatgaac |
346 |
Q |
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| T |
56483802 |
gcaggtccataacctgtttaatttcatgccacatgtccttcgccgagataccctcgtaagaaccagatataacaaagacagggcattctgagacatgaac |
56483901 |
T |
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| Q |
347 |
atgttcggtctcttctgctgcaattgcaaatgtgatgggagattgctcatttgcagtcctgtacatgcatatatcaatttataaattcaaggattgaatt |
446 |
Q |
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| T |
56483902 |
atgttcggtctcttctgctgcaattgcaaatgtgacgggagattgctcatttgcagtcctgtacatgcatgtatcaatttataaattcaaggattgaatt |
56484001 |
T |
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| Q |
447 |
tcttttcatccattgcctaaaaagatattaacaagttatagttacttgtgatgtagaagcacaccatgcaccccatcaggcatcct |
532 |
Q |
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| T |
56484002 |
tcttttcatccattgcctaaaaagatattaacaagttatagttacttgtgatgtagaagcacaccatgcaccccatcaggcatcct |
56484087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 56483557 - 56483768
Alignment:
| Q |
1 |
atatgatgaaagagtgacgtccaaagagacctaagtactgataattgtcatgataaaaagagtttcagatgcacaaaacaaaaggaaagtgacagaaagg |
100 |
Q |
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| T |
56483557 |
atatgatgaaagagtgacgtccaaagagacctaagtactgataattgtcatgataaaaagagtttcagatgcacaaaacaaaaggaaagtgacagaaagg |
56483656 |
T |
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| Q |
101 |
aaactccaagtacttgtgttataaaatgcttaatagagcacaatggtagcttatctgggagaagacagcatgaaggaaggatgaatagcataacatagtg |
200 |
Q |
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| T |
56483657 |
aaactccaagtacttgtgttataaaatgcttaatagagcacgatggtagcttatctgggagaagacagcatgaaggaaggatgaatagcataacatagta |
56483756 |
T |
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| Q |
201 |
gtaataccaaac |
212 |
Q |
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| T |
56483757 |
gtaataccaaac |
56483768 |
T |
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