View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16200_low_3 (Length: 279)

Name: NF16200_low_3
Description: NF16200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16200_low_3
NF16200_low_3
[»] chr4 (8 HSPs)
chr4 (23-271)||(15349253-15349501)
chr4 (23-271)||(14687181-14687435)
chr4 (23-267)||(42711184-42711434)
chr4 (24-160)||(45240267-45240404)
chr4 (24-160)||(11498023-11498159)
chr4 (24-147)||(18290701-18290824)
chr4 (41-150)||(11918125-11918233)
chr4 (24-161)||(10629417-10629551)
[»] chr7 (13 HSPs)
chr7 (23-271)||(540168-540416)
chr7 (23-271)||(16327176-16327430)
chr7 (23-271)||(9581453-9581707)
chr7 (23-271)||(9729305-9729559)
chr7 (23-271)||(4311279-4311532)
chr7 (23-271)||(8783498-8783752)
chr7 (108-271)||(14223144-14223313)
chr7 (24-161)||(23513736-23513873)
chr7 (24-151)||(4462117-4462244)
chr7 (24-161)||(13741088-13741225)
chr7 (24-157)||(5395811-5395944)
chr7 (24-161)||(12565670-12565807)
chr7 (24-164)||(10439748-10439888)
[»] chr1 (3 HSPs)
chr1 (23-271)||(27045424-27045672)
chr1 (57-155)||(22626469-22626567)
chr1 (24-160)||(21785853-21785986)
[»] chr6 (8 HSPs)
chr6 (23-271)||(22062920-22063168)
chr6 (23-271)||(19586983-19587222)
chr6 (24-177)||(23519161-23519314)
chr6 (24-161)||(18188979-18189116)
chr6 (24-150)||(17818194-17818320)
chr6 (23-161)||(18852688-18852822)
chr6 (23-68)||(29685293-29685338)
chr6 (24-65)||(24390285-24390326)
[»] chr3 (10 HSPs)
chr3 (23-271)||(6813419-6813667)
chr3 (23-274)||(12777913-12778170)
chr3 (23-271)||(15024254-15024508)
chr3 (24-160)||(20562017-20562153)
chr3 (24-160)||(20564325-20564461)
chr3 (24-160)||(20559709-20559845)
chr3 (24-161)||(13090217-13090351)
chr3 (24-161)||(9362367-9362501)
chr3 (24-161)||(13096380-13096514)
chr3 (23-69)||(3246922-3246968)
[»] scaffold0090 (1 HSPs)
scaffold0090 (23-271)||(29312-29566)
[»] chr8 (4 HSPs)
chr8 (23-271)||(20000852-20001103)
chr8 (24-160)||(20040479-20040615)
chr8 (24-164)||(21855186-21855323)
chr8 (24-160)||(17619412-17619545)
[»] scaffold0035 (1 HSPs)
scaffold0035 (23-271)||(51962-52216)
[»] chr5 (7 HSPs)
chr5 (23-271)||(23712116-23712370)
chr5 (24-155)||(20446255-20446386)
chr5 (24-161)||(21282320-21282458)
chr5 (24-147)||(18487473-18487596)
chr5 (24-150)||(23602050-23602173)
chr5 (24-161)||(24939200-24939334)
chr5 (24-144)||(24218516-24218633)
[»] scaffold0485 (1 HSPs)
scaffold0485 (23-271)||(11313-11568)
[»] chr2 (2 HSPs)
chr2 (24-161)||(24500997-24501134)
chr2 (24-169)||(25339516-25339661)
[»] scaffold0222 (1 HSPs)
scaffold0222 (24-147)||(18509-18632)
[»] scaffold0220 (1 HSPs)
scaffold0220 (42-161)||(11741-11860)
[»] scaffold0566 (1 HSPs)
scaffold0566 (24-160)||(1275-1411)
[»] scaffold0026 (1 HSPs)
scaffold0026 (57-161)||(17034-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (24-161)||(38043-38177)
[»] scaffold0012 (2 HSPs)
scaffold0012 (24-150)||(12854-12977)
scaffold0012 (24-150)||(8745-8868)
[»] scaffold1184 (1 HSPs)
scaffold1184 (31-65)||(537-571)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 15349253 - 15349501
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15349253 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 15349352  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349353 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 15349452  T
Q  223 tcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  15349453 tcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 14687181 - 14687435
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||     
T  14687181 ttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaata 14687280  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||      |||||| |||||||||||||||||||| |||||||    
T  14687281 attctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcc 14687380  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  14687381 tcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 42711184 - 42711434
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  42711184 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 42711283  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  42711284 attctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 42711383  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtga 267  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42711384 tcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 45240267 - 45240404
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaa-ttagctctaatg 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| | | |||| |||||||||||||| ||| |||||  || ||    
T  45240267 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg 45240366  T
Q  123 attctccattcatattggtaattgtgagtagggtcatg 160  Q
    | |||||| ||||||||||||||||||| |||| ||||    
T  45240367 actctccactcatattggtaattgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 11498023 - 11498159
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| |   ||||||||||||||||||| |||||| |   | |||    
T  11498023 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattga 11498122  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| |||||||||||||||| || |||||||||    
T  11498123 ctctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 18290824 - 18290701
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| | |||||| ||||||||||| ||  |||||||||||||||||||  |||| ||  || |||    
T  18290824 tgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattga 18290725  T
Q  124 ttctccattcatattggtaattgt 147  Q
     | |||| ||||||||||||||||    
T  18290724 atttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  41 accaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattgg 140  Q
    ||||||||||| ||| |||||||||||||  || ||||| ||||||  ||||||||||||||||||| ||||||| ||| ||| | |||| |||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  141 taattgtgag 150  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 10629551 - 10629417
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| ||| |||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  10629551 tgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 10629455  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| ||||||||| ||||||||| |||| |||||    
T  10629454 ctctccactcatattgggaattgtgagaagggccatgg 10629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 540168 - 540416
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  540168 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatg 540267  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 222  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  540268 attctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 540367  T
Q  223 tcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  540368 tcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 16327176 - 16327430
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||     
T  16327176 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaata 16327275  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || |||||||    
T  16327276 attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc 16327375  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16327376 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 9581707 - 9581453
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  9581707 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 9581608  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    || |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  9581607 atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 9581508  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581507 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 9729559 - 9729305
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||     
T  9729559 ttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaata 9729460  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    || |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  9729459 atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 9729360  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9729359 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 4311532 - 4311279
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  4311532 ttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaata 4311433  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||      |||||| |||| ||||||||||||| | |||||||    
T  4311432 attctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcc 4311333  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||| |||||||||||||| ||| |||| || ||| |||||| ||||||||    
T  4311332 tcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 8783498 - 8783752
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||||| || ||||     
T  8783498 ttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaata 8783597  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    ||||||| |||||||| |||||||||||||||| |||||||| ||||||| | ||||||      |||||| |||| ||||||||||||| | |||||||    
T  8783598 attctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatcc 8783697  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
     |||||||| ||||||||||||||||| |||| || |||||||||| ||||||||    
T  8783698 ccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  108 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      |||||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  202 agttctcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 23513873 - 23513736
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||  || ||||| |||||||| ||||||||||||||| |||||||||||||||||||  |||||||  || |||    
T  23513873 tgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattga 23513774  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| |||||| |||||||||||| |||| |||||    
T  23513773 ctctccactcatataggtaattgtgagaagggccatgg 23513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 4462117 - 4462244
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||  || ||||| |||  |  ||||||||||||||||||||||| |||||||||||    
T  4462117 tgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatga 4462216  T
Q  124 ttctccattcatattggtaattgtgagt 151  Q
    || || | |||||||||| |||||||||    
T  4462217 ttttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 13741225 - 13741088
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||| ||||| ||||||||||   | ||||| |||||||| | ||||||||||||| ||||||||||||||||||| |||||| |  || |||    
T  13741225 tgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattga 13741126  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| ||||||||||||||||||| |||| |||||    
T  13741125 ctctccactcatattggtaattgtgagaagggccatgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 5395944 - 5395811
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  5395944 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 5395845  T
Q  124 ttctccattcatattggtaattgtgagtagggtc 157  Q
      ||||| |||| ||||||||||| || ||||||    
T  5395844 cgctccactcattttggtaattgttagaagggtc 5395811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 12565807 - 12565670
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    |||||| ||||||||||||||||||||| ||| ||||| |||||||| | ||||||||| ||  ||||||||  |||||||||  |||||||  || |||    
T  12565807 tgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattga 12565708  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| |||||||||||||||| || |||| |||||    
T  12565707 ctctccactcatattggtaattgttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 10439748 - 10439888
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||   | |||||||| ||  |||||||||||||||||||  ||||| |  || |||    
T  10439748 tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattga 10439847  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgggtt 164  Q
     |||||| ||||||||||||||||||| ||||  |||||||    
T  10439848 ctctccactcatattggtaattgtgagaagggctatgggtt 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 27045672 - 27045424
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27045672 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 27045573  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 222  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045572 attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 27045473  T
Q  223 tcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  27045472 tcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
Q  57 ttttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtaggg 155  Q
    ||||| |||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| ||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg 22626567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 21785853 - 21785986
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||| ||||||  |||||||  || |||    
T  21785853 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattga 21785949  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| |||| |||||| |||| || |||| ||||    
T  21785950 ctctccactcatgttggtacttgttagaagggccatg 21785986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 22062920 - 22063168
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22062920 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 22063019  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 222  Q
    ||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063020 attctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 22063119  T
Q  223 tcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  22063120 tcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 19586983 - 19587222
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||               || |||||||||||||||||||||||||||||||||     
T  19586983 ttgtacctgtgggttaataccaacataaatcaaattttccaccacctc---------------cagattaggtagaataatcaaacaattagctctaata 19587067  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    ||||||| || |||||||||||||| ||||||  |||||||| ||||||| ||||||||      |||||| |||| |||||||||||||   |||||||    
T  19587068 attctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcctctctatcc 19587167  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||| |||||||| |||| || |||||||||| ||||||||    
T  19587168 tcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 23519161 - 23519314
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||| ||| | |    
T  23519161 tgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctattta 23519260  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgaca 177  Q
     | |||   |||||||||| ||||||| ||||||||||||| ||||||| ||||    
T  23519261 ctttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagaca 23519314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 18188979 - 18189116
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||| | ||| ||||||||||||||||||| ||||||||  || |||    
T  18188979 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattga 18189078  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| ||||||||||||||||||| ||||||||||    
T  18189079 ctctccactcatattggtaattgtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 17818320 - 17818194
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  17818320 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 17818221  T
Q  124 ttctccattcatattggtaattgtgag 150  Q
     |||||| |||||||||||||||||||    
T  17818220 ctctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 18852822 - 18852688
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||| ||||||||||   ||||||| |||| ||| ||||||||||| ||  ||||||||||||||||| || || || |  || |     
T  18852822 ttgtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatc-aagaaataacattattt 18852727  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgg 161  Q
    | |||||| ||||||||||||||||||| |||| |||||    
T  18852726 actctccactcatattggtaattgtgagaagggccatgg 18852688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 29685338 - 29685293
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacc 68  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  29685338 ttgtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 24390285 - 24390326
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccacc 65  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  24390285 tgtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 6813667 - 6813419
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6813667 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 6813568  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 222  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813567 attctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga 6813468  T
Q  223 tcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||| |||||||  |||| ||||||||||||||||||||||    
T  6813467 tcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 12777913 - 12778170
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  12777913 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 12778012  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||      |||| | |||||| ||||||| || || |||||||    
T  12778013 attctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcc 12778112  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgatgtc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12778113 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 15024508 - 15024254
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||   ||||||||||||||| ||||||||||||||| |     
T  15024508 ttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctatta 15024409  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||| ||||||||||| | | |||||||    
T  15024408 attctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcc 15024309  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||||||||| |||| |  |||||||||||||||||||    
T  15024308 tcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20562153 - 20562017
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20562153 tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20562054  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20562053 ctctccactcatattggtaattgtgagaagggccatg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20564461 - 20564325
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20564461 tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20564362  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20564361 ctctccactcatattggtaattgtgagaagggccatg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20559845 - 20559709
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    |||| |||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20559845 tgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20559746  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20559745 ctctccactcatattggtaattgtgagaagggccatg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 13090217 - 13090351
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  13090217 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 13090313  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     || ||| ||||||||| ||||||||| |||| |||||    
T  13090314 ctcaccactcatattgggaattgtgagaagggccatgg 13090351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 9362367 - 9362501
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| |   |||||||||||||||||||  |||||||  || |||    
T  9362367 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattga 9362463  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| |||||||||  |||||||| |||| |||||    
T  9362464 ctctccactcatattggggattgtgagaagggccatgg 9362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 13096514 - 13096380
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    |||||||||||||||||  |||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  13096514 tgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattga 13096418  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| |||| |||| ||||||||| |||| |||||    
T  13096417 ctctccactcatgttgggaattgtgagaagggccatgg 13096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 3246922 - 3246968
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacct 69  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||    
T  3246922 ttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 29566 - 29312
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  29566 ttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatg 29467  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||    
T  29466 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc 29367  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  29366 tcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 20001103 - 20000852
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20001103 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 20001004  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||    
T  20001003 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc 20000904  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  20000903 tcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 20040479 - 20040615
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||| ||  |||||||||||||||||||  ||||||   || |||    
T  20040479 tgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20040578  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| ||||||||||||||||||| |||| ||||    
T  20040579 ctctccactcatattggtaattgtgagaagggccatg 20040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 21855186 - 21855323
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||| ||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  21855186 tgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 21855282  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgggtt 164  Q
     |||||| ||||||||||||||||||| ||||| |||||||    
T  21855283 ctctccactcatattggtaattgtgagaagggttatgggtt 21855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 17619545 - 17619412
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  17619545 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 17619449  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| ||||||||| ||||||||| |||| ||||    
T  17619448 ctctccactcatattggaaattgtgagaagggccatg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 51962 - 52216
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||     
T  51962 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaata 52061  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || |||||||    
T  52062 attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc 52161  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52162 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 23712116 - 23712370
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatg 122  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||     
T  23712116 ttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaata 23712215  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 216  Q
    || ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||    
T  23712216 atcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 23712315  T
Q  217 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23712316 tcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 20446255 - 20446386
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  20446255 tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 20446354  T
Q  124 ttctccattcatattggtaattgtgagtaggg 155  Q
     |||||| ||||||||||||||||||| ||||    
T  20446355 ctctccactcatattggtaattgtgagaaggg 20446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 21282320 - 21282458
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaa-ttagctctaatg 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| | | |||| |||||||||||||| ||| |||||  || ||    
T  21282320 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg 21282419  T
Q  123 attctccattcatattggtaattgtgagtagggtcatgg 161  Q
    | |||||| ||||||||||||||||||| ||||| ||||    
T  21282420 actctccactcatattggtaattgtgagaagggttatgg 21282458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 18487473 - 18487596
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| ||  |||||||||||||||||||  |||||||  || |||    
T  18487473 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattga 18487572  T
Q  124 ttctccattcatattggtaattgt 147  Q
     |||||| ||||||||||||||||    
T  18487573 ctctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 23602050 - 23602173
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  23602050 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 23602146  T
Q  124 ttctccattcatattggtaattgtgag 150  Q
     || ||| ||||||||| |||||||||    
T  23602147 ctcgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 24939334 - 24939200
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  24939334 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattga 24939238  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     || ||| ||||||||| ||||||||| |||| |||||    
T  24939237 ctcgccactcatattgggaattgtgagaagggccatgg 24939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 24218633 - 24218516
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||| ||||||||||| |||||||||    | ||||| |||| ||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  24218633 tgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 24218537  T
Q  124 ttctccattcatattggtaat 144  Q
     |||||| |||||||||||||    
T  24218536 ctctccactcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 11313 - 11568
Alignment:
Q  23 ttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaat 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  11313 ttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaat 11412  T
Q  122 gattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtag------tataaaagtttagataatagttctcatctatc 215  Q
     |||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||      |||| |||| ||||||||||||| | ||||||    
T  11413 aattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatc 11512  T
Q  216 ctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||| |||| |  |||||||||| ||||||||    
T  11513 ctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 24501134 - 24500997
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||  || |||    
T  24501134 tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga 24501035  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     |||||| | ||||||||||||||||| |||| |||||    
T  24501034 ctctccactaatattggtaattgtgagaagggccatgg 24500997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 25339516 - 25339661
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||| |||| |||||| ||||||||||| |||||||||||||||||  ||||||| ||||||  ||||||||||||||||||||||||||| ||| |||    
T  25339516 tgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattga 25339615  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgggttttaag 169  Q
       |||| |||||||||||||||||||| ||| |||| ||| ||||    
T  25339616 ccttccactcatattggtaattgtgagttgggccatgagttctaag 25339661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 18632 - 18509
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  18632 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 18533  T
Q  124 ttctccattcatattggtaattgt 147  Q
     |||||| ||||||||||||||||    
T  18532 ctctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 11741 - 11860
Alignment:
Q  42 ccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggt 141  Q
    |||||||||| ||| ||||| ||||||||  |||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  142 aattgtgagtagggtcatgg 161  Q
    ||||||||| ||||||||||    
T  11841 aattgtgagaagggtcatgg 11860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 1411 - 1275
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||||  |||||||||| ||  |||||||||||||||||||  |||||||   | |||    
T  1411 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattga 1312  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatg 160  Q
     |||||| |||||||||||||||| || |||||||||    
T  1311 ctctccactcatattggtaattgttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  57 ttttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 156  Q
    ||||| |||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  157 catgg 161  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 38043 - 38177
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  38043 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattga 38139  T
Q  124 ttctccattcatattggtaattgtgagtagggtcatgg 161  Q
     || ||| ||||||||| ||||||||| |||| |||||    
T  38140 ctcgccactcatattggaaattgtgagaagggccatgg 38177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 12854 - 12977
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||   || ||||| ||||||||  |||||||||| || || |||||||||||||| |   |||||||  || |||    
T  12854 tgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataataaggaaattagcattattga 12950  T
Q  124 ttctccattcatattggtaattgtgag 150  Q
     |||| | |||||||||||| ||||||    
T  12951 ctctctactcatattggtaactgtgag 12977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 8745 - 8868
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||| ||||||||||| ||||||||||   | ||||| ||||||||  |||||||||| || || |||||||||||||| |   |||||||  || |||    
T  8745 tgtacatgtgggttagtgccaacataaa---agttttctaccacctccagattagtaatatctaatttaggtagaataataaggaaattagcattattga 8841  T
Q  124 ttctccattcatattggtaattgtgag 150  Q
     |||| | |||||||||||| ||||||    
T  8842 ctctctactcatattggtaactgtgag 8868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 537 - 571
Alignment:
Q  31 gtgggttagtaccaacataaagcaaattttccacc 65  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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