View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16200_low_4 (Length: 267)
Name: NF16200_low_4
Description: NF16200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16200_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 46464449 - 46464704
Alignment:
| Q |
12 |
atgaacaatagagggattactgggagggagggtcctggcattttgaatcccaagatgtttgtgtccaaggttgtgctttgttgtatgctgaaagtttgaa |
111 |
Q |
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| T |
46464449 |
atgaacaatagagggattactgggagggagggtcctggcattttgaatcccaagatgtttgtgtccaaggttgtgctttgttgtatgctgaaagtttgaa |
46464548 |
T |
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| Q |
112 |
gctgtgctaaacatgtgttcataaatattgtgcttaatatgattggtagcattcggactaggatttttgtttcttctacttgtgtcactgtgcaaagatt |
211 |
Q |
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| T |
46464549 |
gctgtgctaaacatgtgttcataaatattgtgcttaatatgattggtagcattcggactaggatttttgtttcttctacttgtgtcactgtgcaaagatt |
46464648 |
T |
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| Q |
212 |
ccatgatcctgtactgtttcccccaactgctgctctgtctaagaatctgagaatcc |
267 |
Q |
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| T |
46464649 |
ccatgatcctgtactgtttcccccaactgctgctctgtctaagaatctgagaatcc |
46464704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 37982445 - 37982556
Alignment:
| Q |
105 |
gtttgaagctgtgctaaacatgtgttcataaatattgtgcttaatatgattggtagcattcggactaggatttttgtttcttctacttgtgtcactgtgc |
204 |
Q |
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| T |
37982445 |
gtttgaagctgtgctaaacatgtgttcattacaattgtacttgccaatataggtaacattcttgttaggatttttacttcttcaacttgtgtcactgtgc |
37982544 |
T |
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| Q |
205 |
aaagattccatg |
216 |
Q |
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| T |
37982545 |
aaaccttccatg |
37982556 |
T |
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