View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16201_low_1 (Length: 549)

Name: NF16201_low_1
Description: NF16201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16201_low_1
NF16201_low_1
[»] chr4 (9 HSPs)
chr4 (15-326)||(32370049-32370360)
chr4 (357-534)||(32369818-32369995)
chr4 (383-425)||(31277039-31277081)
chr4 (389-425)||(36768864-36768900)
chr4 (379-425)||(18513256-18513302)
chr4 (389-425)||(2796554-2796590)
chr4 (385-425)||(20119949-20119989)
chr4 (381-425)||(35212742-35212786)
chr4 (382-426)||(39765533-39765577)
[»] chr6 (5 HSPs)
chr6 (381-425)||(34625734-34625778)
chr6 (381-425)||(34598538-34598582)
chr6 (382-424)||(6294552-6294594)
chr6 (381-421)||(17422274-17422314)
chr6 (393-425)||(19138829-19138861)
[»] chr8 (3 HSPs)
chr8 (381-422)||(2517107-2517148)
chr8 (382-422)||(10170404-10170444)
chr8 (389-425)||(25799156-25799192)
[»] chr5 (2 HSPs)
chr5 (381-425)||(9878047-9878091)
chr5 (391-425)||(28322251-28322285)
[»] chr3 (3 HSPs)
chr3 (389-425)||(49636841-49636877)
chr3 (382-425)||(18268020-18268063)
chr3 (381-425)||(25074789-25074833)
[»] chr2 (2 HSPs)
chr2 (382-423)||(42043214-42043255)
chr2 (389-425)||(5461184-5461220)
[»] chr7 (2 HSPs)
chr7 (381-425)||(23948392-23948436)
chr7 (381-425)||(38134421-38134465)
[»] chr1 (2 HSPs)
chr1 (381-425)||(3451855-3451899)
chr1 (381-425)||(26462660-26462704)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 32370360 - 32370049
Alignment:
Q  15 aatctaaaatcagaggcagtggcagaaaataccattataaacgagaatgtttcgagaagcatccactaaaggctgaacaagcggaacggttcccctaagc 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32370360 aatctaaaatcagaggcagtggcagaaaataccattatagacgagaatgtttcgagaagcatccactaaaggctgaacaagcggaacggttcccctaagc 32370261  T
Q  115 tgcaaagttgcaccgatgaaatgaagttctccgttactatcttcatttgccgaacacaataacgtttcgttgtgttctataaaggatgagatttggtttt 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  32370260 tgcaaagttgcaccgatgaaatgaagttctccgttgctatcttcatttgccgaacacaataacgtttcgtcgtgttctataaaggatgagatttgttttt 32370161  T
Q  215 cattgtgttgcagagtaactttcttcacacccaagctatcaggacctcttctccgcagagcttctttcaggtcatctaaagagatcaacaactgcaccaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32370160 cattgtgttgcagagtaactttcttcacacccaagctatcaggacctcttctccgcagagcttctttcaggtcatctaaagaaatcaacaactgcaccaa 32370061  T
Q  315 atcacacagtac 326  Q
    ||||||||||||    
T  32370060 atcacacagtac 32370049  T

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Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 357 - 534
Target Start/End: Complemental strand, 32369995 - 32369818
Alignment:
Q  357 ttatggtgtcaattgaggcactcagacaccgataataatttgagagaatgaattaattgaatgtaatcaataatcatacatgtagacacagacacgcttt 456  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  32369995 ttatggtgttaattgaggcactcagacaccgataataatttgagaaaatgaattaattgaatgtaatcaataatcatacatgtagacatagacacgcgtt 32369896  T
Q  457 caatcagaagtgtccgagatacaaagattagaactaacttcattaacttacattttcggattggcgatttggggaagt 534  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32369895 caatcagaagtgtcggagatacaaagattagaactaacttcattaacttacattttcggattggcgatttagggaagt 32369818  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 31277081 - 31277039
Alignment:
Q  383 caccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  31277081 caccgataataatttgagaaaatgaactaattgaatgtaatca 31277039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 36768900 - 36768864
Alignment:
Q  389 taataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||| |||||||||||||||||||    
T  36768900 taataatttgagagaattaattaattgaatgtaatca 36768864  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 18513302 - 18513256
Alignment:
Q  379 cagacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||||||| |||||  ||||| ||||||||||    
T  18513302 cagacaccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 2796554 - 2796590
Alignment:
Q  389 taataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  2796554 taataatttgagaaaatgaattaattgaatttaatca 2796590  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 20119949 - 20119989
Alignment:
Q  385 ccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||| |||||| ||||| ||||||||||    
T  20119949 ccgataataatttgagaaaatgaaataatttaatgtaatca 20119989  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 35212786 - 35212742
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    |||||| |||||||||||||| ||| || ||||||||||||||||    
T  35212786 gacaccaataataatttgagaaaattaaataattgaatgtaatca 35212742  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 39765533 - 39765577
Alignment:
Q  382 acaccgataataatttgagagaatgaattaattgaatgtaatcaa 426  Q
    |||||||||||||||  | | ||||||||||||||||||||||||    
T  39765533 acaccgataataattaaaaaaaatgaattaattgaatgtaatcaa 39765577  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 34625734 - 34625778
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  34625734 gacaccgataataatttgagaaaatgaattaattgaatgtaatca 34625778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 34598538 - 34598582
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  34598538 gacaccgataataatttgagaaaatgaattaattggatgtaatca 34598582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 6294594 - 6294552
Alignment:
Q  382 acaccgataataatttgagagaatgaattaattgaatgtaatc 424  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||    
T  6294594 acactgataataatttgagaaaatgaattaattgaatgcaatc 6294552  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 17422314 - 17422274
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgta 421  Q
    ||||||||||||||||||||| |||||  ||||||||||||    
T  17422314 gacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 19138861 - 19138829
Alignment:
Q  393 aatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||||| |||||||||||    
T  19138861 aatttgagagaatgaattaatcgaatgtaatca 19138829  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 2517107 - 2517148
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaa 422  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  2517107 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 10170444 - 10170404
Alignment:
Q  382 acaccgataataatttgagagaatgaattaattgaatgtaa 422  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  10170444 acaccaataataatttgagaaaataaattaattgaatgtaa 10170404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 25799156 - 25799192
Alignment:
Q  389 taataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  25799156 taataatttgagaaaatgaattaattgaatgtgatca 25799192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 9878091 - 9878047
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||    
T  9878091 gacaccaataataatttgagaatatgaattaattgaatgtaatca 9878047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 28322251 - 28322285
Alignment:
Q  391 ataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||| |||||||||||||||||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatca 28322285  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 49636877 - 49636841
Alignment:
Q  389 taataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||| |||||||||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatca 49636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Complemental strand, 18268063 - 18268020
Alignment:
Q  382 acaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||    
T  18268063 acactgataataatttgagaaaatgaattaattgaacgtaatca 18268020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 25074789 - 25074833
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||||| |||||  ||||||| ||||||||    
T  25074789 gacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 42043255 - 42043214
Alignment:
Q  382 acaccgataataatttgagagaatgaattaattgaatgtaat 423  Q
    |||||||||||||||| | | |||||||||||||||||||||    
T  42043255 acaccgataataatttaataaaatgaattaattgaatgtaat 42043214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 5461220 - 5461184
Alignment:
Q  389 taataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  5461220 taataatttgagataataaattaattgaatgtaatca 5461184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 23948392 - 23948436
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||| ||||||||||||| | ||| |||||||||||||||||||    
T  23948392 gacactgataataatttgaaaaaatcaattaattgaatgtaatca 23948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 38134465 - 38134421
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 3451855 - 3451899
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||| ||||||||||||||| || ||||||||||||| ||||||    
T  3451855 gacactgataataatttgagaaaacgaattaattgaatttaatca 3451899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 26462704 - 26462660
Alignment:
Q  381 gacaccgataataatttgagagaatgaattaattgaatgtaatca 425  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  26462704 gacactgataataatttaagaaaatgaaataattgaatgtaatca 26462660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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